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CT47A3 (cancer/testis antigen family 47, member A3)

Identity

Alias_namesmember 3
Alias_symbol (synonym)CT47.3
Other alias
HGNC (Hugo) CT47A3
LocusID (NCBI) 728082
Atlas_Id 50802
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120011345 and ends at 120066151 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A3   33284
Cards
Entrez_Gene (NCBI)CT47A3  728082  cancer/testis antigen family 47, member A3
AliasesCT47.3
GeneCards (Weizmann)CT47A3
Ensembl hg19 (Hinxton)ENSG00000236126 [Gene_View]  chrX:120011345-120066151 [Contig_View]  CT47A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000236126 [Gene_View]  chrX:120011345-120066151 [Contig_View]  CT47A3 [Vega]
ICGC DataPortalENSG00000236126
TCGA cBioPortalCT47A3
AceView (NCBI)CT47A3
Genatlas (Paris)CT47A3
WikiGenes728082
SOURCE (Princeton)CT47A3
Genetics Home Reference (NIH)CT47A3
Genomic and cartography
GoldenPath hg19 (UCSC)CT47A3  -     chrX:120011345-120066151 -  Xq24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CT47A3  -     Xq24   [Description]    (hg38-Dec_2013)
EnsemblCT47A3 - Xq24 [CytoView hg19]  CT47A3 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A3 [Mapview hg19]  CT47A3 [Mapview hg38]
OMIM300782   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080144
RefSeq genomic (Entrez)NC_000023 NG_027740 NG_027741 NT_011786
Consensus coding sequences : CCDS (NCBI)CT47A3
Cluster EST : UnigeneHs.729566 [ NCBI ]
CGAP (NCI)Hs.729566
Alternative Splicing GalleryENSG00000236126
Gene ExpressionCT47A3 [ NCBI-GEO ]   CT47A3 [ EBI - ARRAY_EXPRESS ]   CT47A3 [ SEEK ]   CT47A3 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728082
GTEX Portal (Tissue expression)CT47A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A3
DMDM Disease mutations728082
Blocks (Seattle)CT47A3
SuperfamilyQ5JQC4
Human Protein AtlasENSG00000236126
Peptide AtlasQ5JQC4
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000236126
BioGRIDCT47A3
STRING (EMBL)CT47A3
ZODIACCT47A3
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A3
Atlas of Cancer Signalling NetworkCT47A3
Wikipedia pathwaysCT47A3
Orthology - Evolution
OrthoDB728082
GeneTree (enSembl)ENSG00000236126
Phylogenetic Trees/Animal Genes : TreeFamCT47A3
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A3
Homology/Alignments : Family Browser (UCSC)CT47A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A3
dbVarCT47A3
ClinVarCT47A3
1000_GenomesCT47A3 
Exome Variant ServerCT47A3
ExAC (Exome Aggregation Consortium)CT47A3 (select the gene name)
Genetic variants : HAPMAP728082
Genomic Variants (DGV)CT47A3 [DGVbeta]
DECIPHER (Syndromes)X:120011345-120066151  ENSG00000236126
CONAN: Copy Number AnalysisCT47A3 
Mutations
ICGC Data PortalCT47A3 
TCGA Data PortalCT47A3 
Broad Tumor PortalCT47A3
OASIS PortalCT47A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT47A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT47A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A3
DgiDB (Drug Gene Interaction Database)CT47A3
DoCM (Curated mutations)CT47A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A3 (select a term)
intoGenCT47A3
Cancer3DCT47A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300782   
Orphanet
MedgenCT47A3
Genetic Testing Registry CT47A3
NextProtQ5JQC4 [Medical]
TSGene728082
GENETestsCT47A3
Huge Navigator CT47A3 [HugePedia]
snp3D : Map Gene to Disease728082
BioCentury BCIQCT47A3
ClinGenCT47A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728082
Chemical/Pharm GKB GenePA164718250
Clinical trialCT47A3
Miscellaneous
canSAR (ICR)CT47A3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A3
EVEXCT47A3
GoPubMedCT47A3
iHOPCT47A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:57:52 CEST 2017

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