Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CT47A4 (cancer/testis antigen family 47, member A4)

Identity

Alias_namesmember 4
Alias_symbol (synonym)CT47.4
Other alias
HGNC (Hugo) CT47A4
LocusID (NCBI) 728075
Atlas_Id 50811
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120877491 and ends at 120932297 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A4   33285
Cards
Entrez_Gene (NCBI)CT47A4  728075  cancer/testis antigen family 47, member A4
AliasesCT47.4
GeneCards (Weizmann)CT47A4
Ensembl hg19 (Hinxton)ENSG00000230594 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230594 [Gene_View]  chrX:120877491-120932297 [Contig_View]  CT47A4 [Vega]
ICGC DataPortalENSG00000230594
TCGA cBioPortalCT47A4
AceView (NCBI)CT47A4
Genatlas (Paris)CT47A4
WikiGenes728075
SOURCE (Princeton)CT47A4
Genetics Home Reference (NIH)CT47A4
Genomic and cartography
GoldenPath hg38 (UCSC)CT47A4  -     chrX:120877491-120932297 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT47A4  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblCT47A4 - Xq24 [CytoView hg19]  CT47A4 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A4 [Mapview hg19]  CT47A4 [Mapview hg38]
OMIM300783   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080143
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT47A4
Cluster EST : UnigeneHs.729566 [ NCBI ]
CGAP (NCI)Hs.729566
Alternative Splicing GalleryENSG00000230594
Gene ExpressionCT47A4 [ NCBI-GEO ]   CT47A4 [ EBI - ARRAY_EXPRESS ]   CT47A4 [ SEEK ]   CT47A4 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728075
GTEX Portal (Tissue expression)CT47A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A4
DMDM Disease mutations728075
Blocks (Seattle)CT47A4
SuperfamilyQ5JQC4
Human Protein AtlasENSG00000230594
Peptide AtlasQ5JQC4
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000230594
BioGRIDCT47A4
STRING (EMBL)CT47A4
ZODIACCT47A4
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A4
Atlas of Cancer Signalling NetworkCT47A4
Wikipedia pathwaysCT47A4
Orthology - Evolution
OrthoDB728075
GeneTree (enSembl)ENSG00000230594
Phylogenetic Trees/Animal Genes : TreeFamCT47A4
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A4
Homology/Alignments : Family Browser (UCSC)CT47A4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A4
dbVarCT47A4
ClinVarCT47A4
1000_GenomesCT47A4 
Exome Variant ServerCT47A4
ExAC (Exome Aggregation Consortium)CT47A4 (select the gene name)
Genetic variants : HAPMAP728075
Genomic Variants (DGV)CT47A4 [DGVbeta]
DECIPHERCT47A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT47A4 
Mutations
ICGC Data PortalCT47A4 
TCGA Data PortalCT47A4 
Broad Tumor PortalCT47A4
OASIS PortalCT47A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT47A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT47A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A4
DgiDB (Drug Gene Interaction Database)CT47A4
DoCM (Curated mutations)CT47A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A4 (select a term)
intoGenCT47A4
Cancer3DCT47A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300783   
Orphanet
MedgenCT47A4
Genetic Testing Registry CT47A4
NextProtQ5JQC4 [Medical]
TSGene728075
GENETestsCT47A4
Target ValidationCT47A4
Huge Navigator CT47A4 [HugePedia]
snp3D : Map Gene to Disease728075
BioCentury BCIQCT47A4
ClinGenCT47A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728075
Chemical/Pharm GKB GenePA164718261
Clinical trialCT47A4
Miscellaneous
canSAR (ICR)CT47A4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A4
EVEXCT47A4
GoPubMedCT47A4
iHOPCT47A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:29:54 CEST 2017

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