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CT47A5 (cancer/testis antigen family 47, member A5)

Identity

Alias_namesmember 5
Alias_symbol (synonym)CT47.5
Other alias
HGNC (Hugo) CT47A5
LocusID (NCBI) 728072
Atlas_Id 50820
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120877491 and ends at 120932297 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A5   33286
Cards
Entrez_Gene (NCBI)CT47A5  728072  cancer/testis antigen family 47, member A5
AliasesCT47.5
GeneCards (Weizmann)CT47A5
Ensembl hg19 (Hinxton)ENSG00000237957 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237957 [Gene_View]  chrX:120877491-120932297 [Contig_View]  CT47A5 [Vega]
ICGC DataPortalENSG00000237957
TCGA cBioPortalCT47A5
AceView (NCBI)CT47A5
Genatlas (Paris)CT47A5
WikiGenes728072
SOURCE (Princeton)CT47A5
Genetics Home Reference (NIH)CT47A5
Genomic and cartography
GoldenPath hg38 (UCSC)CT47A5  -     chrX:120877491-120932297 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT47A5  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblCT47A5 - Xq24 [CytoView hg19]  CT47A5 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A5 [Mapview hg19]  CT47A5 [Mapview hg38]
OMIM300784   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080142
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT47A5
Cluster EST : UnigeneHs.729566 [ NCBI ]
CGAP (NCI)Hs.729566
Alternative Splicing GalleryENSG00000237957
Gene ExpressionCT47A5 [ NCBI-GEO ]   CT47A5 [ EBI - ARRAY_EXPRESS ]   CT47A5 [ SEEK ]   CT47A5 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728072
GTEX Portal (Tissue expression)CT47A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A5
DMDM Disease mutations728072
Blocks (Seattle)CT47A5
SuperfamilyQ5JQC4
Human Protein AtlasENSG00000237957
Peptide AtlasQ5JQC4
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000237957
BioGRIDCT47A5
STRING (EMBL)CT47A5
ZODIACCT47A5
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A5
Atlas of Cancer Signalling NetworkCT47A5
Wikipedia pathwaysCT47A5
Orthology - Evolution
OrthoDB728072
GeneTree (enSembl)ENSG00000237957
Phylogenetic Trees/Animal Genes : TreeFamCT47A5
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A5
Homology/Alignments : Family Browser (UCSC)CT47A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A5
dbVarCT47A5
ClinVarCT47A5
1000_GenomesCT47A5 
Exome Variant ServerCT47A5
ExAC (Exome Aggregation Consortium)CT47A5 (select the gene name)
Genetic variants : HAPMAP728072
Genomic Variants (DGV)CT47A5 [DGVbeta]
DECIPHERCT47A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT47A5 
Mutations
ICGC Data PortalCT47A5 
TCGA Data PortalCT47A5 
Broad Tumor PortalCT47A5
OASIS PortalCT47A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT47A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT47A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A5
DgiDB (Drug Gene Interaction Database)CT47A5
DoCM (Curated mutations)CT47A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A5 (select a term)
intoGenCT47A5
Cancer3DCT47A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300784   
Orphanet
MedgenCT47A5
Genetic Testing Registry CT47A5
NextProtQ5JQC4 [Medical]
TSGene728072
GENETestsCT47A5
Huge Navigator CT47A5 [HugePedia]
snp3D : Map Gene to Disease728072
BioCentury BCIQCT47A5
ClinGenCT47A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728072
Chemical/Pharm GKB GenePA164718272
Clinical trialCT47A5
Miscellaneous
canSAR (ICR)CT47A5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A5
EVEXCT47A5
GoPubMedCT47A5
iHOPCT47A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:12:07 CEST 2017

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