Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CT47A6 (cancer/testis antigen family 47, member A6)

Identity

Alias_namesmember 6
Alias_symbol (synonym)CT47.6
Other alias
HGNC (Hugo) CT47A6
LocusID (NCBI) 728062
Atlas_Id 50825
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120933841 and ends at 120937158 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A6   33287
Cards
Entrez_Gene (NCBI)CT47A6  728062  cancer/testis antigen family 47, member A6
AliasesCT47.6
GeneCards (Weizmann)CT47A6
Ensembl hg19 (Hinxton)ENSG00000226023 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226023 [Gene_View]  chrX:120933841-120937158 [Contig_View]  CT47A6 [Vega]
ICGC DataPortalENSG00000226023
TCGA cBioPortalCT47A6
AceView (NCBI)CT47A6
Genatlas (Paris)CT47A6
WikiGenes728062
SOURCE (Princeton)CT47A6
Genetics Home Reference (NIH)CT47A6
Genomic and cartography
GoldenPath hg38 (UCSC)CT47A6  -     chrX:120933841-120937158 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT47A6  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblCT47A6 - Xq24 [CytoView hg19]  CT47A6 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A6 [Mapview hg19]  CT47A6 [Mapview hg38]
OMIM300785   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080141
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT47A6
Cluster EST : UnigeneHs.723061 [ NCBI ]
CGAP (NCI)Hs.723061
Alternative Splicing GalleryENSG00000226023
Gene ExpressionCT47A6 [ NCBI-GEO ]   CT47A6 [ EBI - ARRAY_EXPRESS ]   CT47A6 [ SEEK ]   CT47A6 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728062
GTEX Portal (Tissue expression)CT47A6
Human Protein AtlasENSG00000226023-CT47A6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A6
DMDM Disease mutations728062
Blocks (Seattle)CT47A6
SuperfamilyQ5JQC4
Human Protein Atlas [tissue]ENSG00000226023-CT47A6 [tissue]
Peptide AtlasQ5JQC4
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000226023
BioGRIDCT47A6
STRING (EMBL)CT47A6
ZODIACCT47A6
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A6
Atlas of Cancer Signalling NetworkCT47A6
Wikipedia pathwaysCT47A6
Orthology - Evolution
OrthoDB728062
GeneTree (enSembl)ENSG00000226023
Phylogenetic Trees/Animal Genes : TreeFamCT47A6
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A6
Homology/Alignments : Family Browser (UCSC)CT47A6
Gene fusions - Rearrangements
Tumor Fusion PortalCT47A6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A6
dbVarCT47A6
ClinVarCT47A6
1000_GenomesCT47A6 
Exome Variant ServerCT47A6
ExAC (Exome Aggregation Consortium)ENSG00000226023
GNOMAD BrowserENSG00000226023
Genetic variants : HAPMAP728062
Genomic Variants (DGV)CT47A6 [DGVbeta]
DECIPHERCT47A6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT47A6 
Mutations
ICGC Data PortalCT47A6 
TCGA Data PortalCT47A6 
Broad Tumor PortalCT47A6
OASIS PortalCT47A6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT47A6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT47A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A6
DgiDB (Drug Gene Interaction Database)CT47A6
DoCM (Curated mutations)CT47A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A6 (select a term)
intoGenCT47A6
Cancer3DCT47A6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300785   
Orphanet
DisGeNETCT47A6
MedgenCT47A6
Genetic Testing Registry CT47A6
NextProtQ5JQC4 [Medical]
TSGene728062
GENETestsCT47A6
Target ValidationCT47A6
Huge Navigator CT47A6 [HugePedia]
snp3D : Map Gene to Disease728062
BioCentury BCIQCT47A6
ClinGenCT47A6 >TR>Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728062
Chemical/Pharm GKB GenePA164718283
Clinical trialCT47A6
Miscellaneous
canSAR (ICR)CT47A6 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A6
EVEXCT47A6
GoPubMedCT47A6
iHOPCT47A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:09:20 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.