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CT47A7 (cancer/testis antigen family 47, member A7)

Identity

Alias_namesmember 7
Alias_symbol (synonym)CT47.7
Other alias
HGNC (Hugo) CT47A7
LocusID (NCBI) 653282
Atlas_Id 50828
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120953283 and ends at 120956600 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A7   33288
Cards
Entrez_Gene (NCBI)CT47A7  653282  cancer/testis antigen family 47, member A7
AliasesCT47.7
GeneCards (Weizmann)CT47A7
Ensembl hg19 (Hinxton)ENSG00000228517 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228517 [Gene_View]  ENSG00000228517 [Sequence]  chrX:120953283-120956600 [Contig_View]  CT47A7 [Vega]
ICGC DataPortalENSG00000228517
TCGA cBioPortalCT47A7
AceView (NCBI)CT47A7
Genatlas (Paris)CT47A7
WikiGenes653282
SOURCE (Princeton)CT47A7
Genetics Home Reference (NIH)CT47A7
Genomic and cartography
GoldenPath hg38 (UCSC)CT47A7  -     chrX:120953283-120956600 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT47A7  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblCT47A7 - Xq24 [CytoView hg19]  CT47A7 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A7 [Mapview hg19]  CT47A7 [Mapview hg38]
OMIM300786   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080140
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT47A7
Cluster EST : UnigeneHs.712504 [ NCBI ]
CGAP (NCI)Hs.712504
Alternative Splicing GalleryENSG00000228517
Gene ExpressionCT47A7 [ NCBI-GEO ]   CT47A7 [ EBI - ARRAY_EXPRESS ]   CT47A7 [ SEEK ]   CT47A7 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653282
GTEX Portal (Tissue expression)CT47A7
Human Protein AtlasENSG00000228517-CT47A7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A7
DMDM Disease mutations653282
Blocks (Seattle)CT47A7
SuperfamilyQ5JQC4
Human Protein Atlas [tissue]ENSG00000228517-CT47A7 [tissue]
Peptide AtlasQ5JQC4
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000228517
BioGRIDCT47A7
STRING (EMBL)CT47A7
ZODIACCT47A7
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A7
Atlas of Cancer Signalling NetworkCT47A7
Wikipedia pathwaysCT47A7
Orthology - Evolution
OrthoDB653282
GeneTree (enSembl)ENSG00000228517
Phylogenetic Trees/Animal Genes : TreeFamCT47A7
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A7
Homology/Alignments : Family Browser (UCSC)CT47A7
Gene fusions - Rearrangements
Fusion : QuiverCT47A7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A7
dbVarCT47A7
ClinVarCT47A7
1000_GenomesCT47A7 
Exome Variant ServerCT47A7
ExAC (Exome Aggregation Consortium)ENSG00000228517
GNOMAD BrowserENSG00000228517
Varsome BrowserCT47A7
Genetic variants : HAPMAP653282
Genomic Variants (DGV)CT47A7 [DGVbeta]
DECIPHERCT47A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT47A7 
Mutations
ICGC Data PortalCT47A7 
TCGA Data PortalCT47A7 
Broad Tumor PortalCT47A7
OASIS PortalCT47A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT47A7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT47A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A7
DgiDB (Drug Gene Interaction Database)CT47A7
DoCM (Curated mutations)CT47A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A7 (select a term)
intoGenCT47A7
Cancer3DCT47A7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300786   
Orphanet
DisGeNETCT47A7
MedgenCT47A7
Genetic Testing Registry CT47A7
NextProtQ5JQC4 [Medical]
TSGene653282
GENETestsCT47A7
Target ValidationCT47A7
Huge Navigator CT47A7 [HugePedia]
snp3D : Map Gene to Disease653282
BioCentury BCIQCT47A7
ClinGenCT47A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653282
Chemical/Pharm GKB GenePA164718294
Clinical trialCT47A7
Miscellaneous
canSAR (ICR)CT47A7 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A7
EVEXCT47A7
GoPubMedCT47A7
iHOPCT47A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:17:36 CEST 2018

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