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CT47A8 (cancer/testis antigen family 47, member A8)

Identity

Alias_namesmember 8
Alias_symbol (synonym)CT47.8
Other alias
HGNC (Hugo) CT47A8
LocusID (NCBI) 728049
Atlas_Id 50799
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120011345 and ends at 120066151 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A8   33289
Cards
Entrez_Gene (NCBI)CT47A8  728049  cancer/testis antigen family 47, member A8
AliasesCT47.8
GeneCards (Weizmann)CT47A8
Ensembl hg19 (Hinxton)ENSG00000230347 [Gene_View]  chrX:120011345-120066151 [Contig_View]  CT47A8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000230347 [Gene_View]  chrX:120011345-120066151 [Contig_View]  CT47A8 [Vega]
ICGC DataPortalENSG00000230347
TCGA cBioPortalCT47A8
AceView (NCBI)CT47A8
Genatlas (Paris)CT47A8
WikiGenes728049
SOURCE (Princeton)CT47A8
Genetics Home Reference (NIH)CT47A8
Genomic and cartography
GoldenPath hg19 (UCSC)CT47A8  -     chrX:120011345-120066151 -  Xq24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CT47A8  -     Xq24   [Description]    (hg38-Dec_2013)
EnsemblCT47A8 - Xq24 [CytoView hg19]  CT47A8 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A8 [Mapview hg19]  CT47A8 [Mapview hg38]
OMIM300787   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080139
RefSeq genomic (Entrez)NC_000023 NG_027737 NG_027738 NT_011786
Consensus coding sequences : CCDS (NCBI)CT47A8
Cluster EST : UnigeneHs.729566 [ NCBI ]
CGAP (NCI)Hs.729566
Alternative Splicing GalleryENSG00000230347
Gene ExpressionCT47A8 [ NCBI-GEO ]   CT47A8 [ EBI - ARRAY_EXPRESS ]   CT47A8 [ SEEK ]   CT47A8 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728049
GTEX Portal (Tissue expression)CT47A8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A8
DMDM Disease mutations728049
Blocks (Seattle)CT47A8
SuperfamilyQ5JQC4
Human Protein AtlasENSG00000230347
Peptide AtlasQ5JQC4
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000230347
BioGRIDCT47A8
STRING (EMBL)CT47A8
ZODIACCT47A8
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A8
Atlas of Cancer Signalling NetworkCT47A8
Wikipedia pathwaysCT47A8
Orthology - Evolution
OrthoDB728049
GeneTree (enSembl)ENSG00000230347
Phylogenetic Trees/Animal Genes : TreeFamCT47A8
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A8
Homology/Alignments : Family Browser (UCSC)CT47A8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A8
dbVarCT47A8
ClinVarCT47A8
1000_GenomesCT47A8 
Exome Variant ServerCT47A8
ExAC (Exome Aggregation Consortium)CT47A8 (select the gene name)
Genetic variants : HAPMAP728049
Genomic Variants (DGV)CT47A8 [DGVbeta]
DECIPHER (Syndromes)X:120011345-120066151  ENSG00000230347
CONAN: Copy Number AnalysisCT47A8 
Mutations
ICGC Data PortalCT47A8 
TCGA Data PortalCT47A8 
Broad Tumor PortalCT47A8
OASIS PortalCT47A8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT47A8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT47A8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A8
DgiDB (Drug Gene Interaction Database)CT47A8
DoCM (Curated mutations)CT47A8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A8 (select a term)
intoGenCT47A8
Cancer3DCT47A8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300787   
Orphanet
MedgenCT47A8
Genetic Testing Registry CT47A8
NextProtQ5JQC4 [Medical]
TSGene728049
GENETestsCT47A8
Huge Navigator CT47A8 [HugePedia]
snp3D : Map Gene to Disease728049
BioCentury BCIQCT47A8
ClinGenCT47A8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728049
Chemical/Pharm GKB GenePA164718305
Clinical trialCT47A8
Miscellaneous
canSAR (ICR)CT47A8 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A8
EVEXCT47A8
GoPubMedCT47A8
iHOPCT47A8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:02:04 CET 2017

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