Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CT47A9 (cancer/testis antigen family 47, member A9)

Identity

Alias_namesmember 9
Alias_symbol (synonym)CT47.9
Other alias
HGNC (Hugo) CT47A9
LocusID (NCBI) 728042
Atlas_Id 50783
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120877491 and ends at 120932297 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A9   33290
Cards
Entrez_Gene (NCBI)CT47A9  728042  cancer/testis antigen family 47, member A9
AliasesCT47.9
GeneCards (Weizmann)CT47A9
Ensembl hg19 (Hinxton)ENSG00000226600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226600 [Gene_View]  chrX:120877491-120932297 [Contig_View]  CT47A9 [Vega]
ICGC DataPortalENSG00000226600
TCGA cBioPortalCT47A9
AceView (NCBI)CT47A9
Genatlas (Paris)CT47A9
WikiGenes728042
SOURCE (Princeton)CT47A9
Genetics Home Reference (NIH)CT47A9
Genomic and cartography
GoldenPath hg38 (UCSC)CT47A9  -     chrX:120877491-120932297 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT47A9  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblCT47A9 - Xq24 [CytoView hg19]  CT47A9 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A9 [Mapview hg19]  CT47A9 [Mapview hg38]
OMIM300788   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080138
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT47A9
Cluster EST : UnigeneHs.729566 [ NCBI ]
CGAP (NCI)Hs.729566
Alternative Splicing GalleryENSG00000226600
Gene ExpressionCT47A9 [ NCBI-GEO ]   CT47A9 [ EBI - ARRAY_EXPRESS ]   CT47A9 [ SEEK ]   CT47A9 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728042
GTEX Portal (Tissue expression)CT47A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A9
DMDM Disease mutations728042
Blocks (Seattle)CT47A9
SuperfamilyQ5JQC4
Human Protein AtlasENSG00000226600
Peptide AtlasQ5JQC4
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000226600
BioGRIDCT47A9
STRING (EMBL)CT47A9
ZODIACCT47A9
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A9
Atlas of Cancer Signalling NetworkCT47A9
Wikipedia pathwaysCT47A9
Orthology - Evolution
OrthoDB728042
GeneTree (enSembl)ENSG00000226600
Phylogenetic Trees/Animal Genes : TreeFamCT47A9
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A9
Homology/Alignments : Family Browser (UCSC)CT47A9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A9
dbVarCT47A9
ClinVarCT47A9
1000_GenomesCT47A9 
Exome Variant ServerCT47A9
ExAC (Exome Aggregation Consortium)CT47A9 (select the gene name)
Genetic variants : HAPMAP728042
Genomic Variants (DGV)CT47A9 [DGVbeta]
DECIPHERCT47A9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT47A9 
Mutations
ICGC Data PortalCT47A9 
TCGA Data PortalCT47A9 
Broad Tumor PortalCT47A9
OASIS PortalCT47A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT47A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT47A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A9
DgiDB (Drug Gene Interaction Database)CT47A9
DoCM (Curated mutations)CT47A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A9 (select a term)
intoGenCT47A9
Cancer3DCT47A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300788   
Orphanet
MedgenCT47A9
Genetic Testing Registry CT47A9
NextProtQ5JQC4 [Medical]
TSGene728042
GENETestsCT47A9
Target ValidationCT47A9
Huge Navigator CT47A9 [HugePedia]
snp3D : Map Gene to Disease728042
BioCentury BCIQCT47A9
ClinGenCT47A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728042
Chemical/Pharm GKB GenePA164718316
Clinical trialCT47A9
Miscellaneous
canSAR (ICR)CT47A9 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A9
EVEXCT47A9
GoPubMedCT47A9
iHOPCT47A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:04:08 CEST 2017

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