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CT47B1 (cancer/testis antigen family 47, member B1)

Identity

Alias_namesmember 13
Alias_symbol (synonym)CT47.13
Other aliasCT47A13
HGNC (Hugo) CT47B1
LocusID (NCBI) 643311
Atlas_Id 50790
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120872598 and ends at 120875925 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47B1   33293
Cards
Entrez_Gene (NCBI)CT47B1  643311  cancer/testis antigen family 47, member B1
AliasesCT47.13; CT47A13
GeneCards (Weizmann)CT47B1
Ensembl hg19 (Hinxton)ENSG00000236446 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236446 [Gene_View]  chrX:120872598-120875925 [Contig_View]  CT47B1 [Vega]
ICGC DataPortalENSG00000236446
TCGA cBioPortalCT47B1
AceView (NCBI)CT47B1
Genatlas (Paris)CT47B1
WikiGenes643311
SOURCE (Princeton)CT47B1
Genetics Home Reference (NIH)CT47B1
Genomic and cartography
GoldenPath hg38 (UCSC)CT47B1  -     chrX:120872598-120875925 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT47B1  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblCT47B1 - Xq24 [CytoView hg19]  CT47B1 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47B1 [Mapview hg19]  CT47B1 [Mapview hg38]
OMIM300790   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145718
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT47B1
Cluster EST : UnigeneHs.729566 [ NCBI ]
CGAP (NCI)Hs.729566
Alternative Splicing GalleryENSG00000236446
Gene ExpressionCT47B1 [ NCBI-GEO ]   CT47B1 [ EBI - ARRAY_EXPRESS ]   CT47B1 [ SEEK ]   CT47B1 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643311
GTEX Portal (Tissue expression)CT47B1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C2W7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C2W7  [Sequence]  [Exons]&nbwp;&n`s`;[Medical]  [Publications]
With graphics : InterProP0C2W7
Splice isoforms : SwissVarP0C2W7
PhosPhoSitePlusP0C2W7
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47B1
DMDM Disease mutations643311
Blocks (Seattle)CT47B1
SuperfamilyP0C2W7
Human Protein AtlasENSG00000236446
Peptide AtlasP0C2W7
IPIIPI00644400   
Protein Interaction databases
DIP (DOE-UCLA)P0C2W7
IntAct (EBI)P0C2W7
FunCoupENSG00000236446
BioGRIDCT47B1
STRING (EMBL)CT47B1
ZODIACCT47B1
Ontologies - Pathways
QuickGOP0C2W7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47B1
Atlas of Cancer Signalling NetworkCT47B1
Wikipedia pathwaysCT47B1
Orthology - Evolution
OrthoDB643311
GeneTree (enSembl)ENSG00000236446
Phylogenetic Trees/Animal Genes : TreeFamCT47B1
HOVERGENP0C2W7
HOGENOMP0C2W7
Homologs : HomoloGeneCT47B1
Homology/Alignments : Family Browser (UCSC)CT47B1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47B1
dbVarCT47B1
ClinVarCT47B1
1000_GenomesCT47B1 
Exome Variant ServerCT47B1
ExAC (Exome Aggregation Consortium)CT47B1 (select the gene name)
Genetic variants : HAPMAP643311
Genomic Variants (DGV)CT47B1 [DGVbeta]
DECIPHERCT47B1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT47B1 
Mutations
ICGC Data PortalCT47B1 
TCGA Data PortalCT47B1 
Broad Tumor PortalCT47B1
OASIS PortalCT47B1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT47B1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT47B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47B1
DgiDB (Drug Gene Interaction Database)CT47B1
DoCM (Curated mutations)CT47B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47B1 (select a term)
intoGenCT47B1
Cancer3DCT47B1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300790   
Orphanet
MedgenCT47B1
Genetic Testing Registry CT47B1
NextProtP0C2W7 [Medical]
TSGene643311
GENETestsCT47B1
Target ValidationCT47B1
Huge Navigator CT47B1 [HugePedia]
snp3D : Map Gene to Disease643311
BioCentury BCIQCT47B1
ClinGenCT47B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643311
Chemical/Pharm GKB GenePA164718327
Clinical trialCT47B1
Miscellaneous
canSAR (ICR)CT47B1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47B1
EVEXCT47B1
GoPubMedCT47B1
iHOPCT47B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:04:08 CEST 2017

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