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CT55 (cancer/testis antigen 55)

Identity

Alias_namesCXorf48
chromosome X open reading frame 48
Alias_symbol (synonym)FLJ20527
Other aliasBJHCC20A
HGNC (Hugo) CT55
LocusID (NCBI) 54967
Atlas_Id 51111
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135156536 and ends at 135171827 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT55   26047
Cards
Entrez_Gene (NCBI)CT55  54967  cancer/testis antigen 55
AliasesBJHCC20A; CXorf48
GeneCards (Weizmann)CT55
Ensembl hg19 (Hinxton)ENSG00000169551 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169551 [Gene_View]  chrX:135156536-135171827 [Contig_View]  CT55 [Vega]
ICGC DataPortalENSG00000169551
TCGA cBioPortalCT55
AceView (NCBI)CT55
Genatlas (Paris)CT55
WikiGenes54967
SOURCE (Princeton)CT55
Genetics Home Reference (NIH)CT55
Genomic and cartography
GoldenPath hg38 (UCSC)CT55  -     chrX:135156536-135171827 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT55  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblCT55 - Xq26.3 [CytoView hg19]  CT55 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBICT55 [Mapview hg19]  CT55 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF520814 AK000534 AY352211 BC020662 HQ447779
RefSeq transcript (Entrez)NM_001031705 NM_017863
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT55
Cluster EST : UnigeneHs.272804 [ NCBI ]
CGAP (NCI)Hs.272804
Alternative Splicing GalleryENSG00000169551
Gene ExpressionCT55 [ NCBI-GEO ]   CT55 [ EBI - ARRAY_EXPRESS ]   CT55 [ SEEK ]   CT55 [ MEM ]
Gene Expression Viewer (FireBrowse)CT55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54967
GTEX Portal (Tissue expression)CT55
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUE5
Splice isoforms : SwissVarQ8WUE5
PhosPhoSitePlusQ8WUE5
Domains : Interpro (EBI)NA-bd_OB-fold    S1-like_RNA-bd_dom    SDE3   
Domain families : Pfam (Sanger)S1-like (PF14444)   
Domain families : Pfam (NCBI)pfam14444   
Conserved Domain (NCBI)CT55
DMDM Disease mutations54967
Blocks (Seattle)CT55
SuperfamilyQ8WUE5
Human Protein AtlasENSG00000169551
Peptide AtlasQ8WUE5
HPRD06534
IPIIPI00107708   IPI00414172   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUE5
IntAct (EBI)Q8WUE5
FunCoupENSG00000169551
BioGRIDCT55
STRING (EMBL)CT55
ZODIACCT55
Ontologies - Pathways
QuickGOQ8WUE5
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCT55
Atlas of Cancer Signalling NetworkCT55
Wikipedia pathwaysCT55
Orthology - Evolution
OrthoDB54967
GeneTree (enSembl)ENSG00000169551
Phylogenetic Trees/Animal Genes : TreeFamCT55
HOVERGENQ8WUE5
HOGENOMQ8WUE5
Homologs : HomoloGeneCT55
Homology/Alignments : Family Browser (UCSC)CT55
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT55
dbVarCT55
ClinVarCT55
1000_GenomesCT55 
Exome Variant ServerCT55
ExAC (Exome Aggregation Consortium)CT55 (select the gene name)
Genetic variants : HAPMAP54967
Genomic Variants (DGV)CT55 [DGVbeta]
DECIPHERCT55 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT55 
Mutations
ICGC Data PortalCT55 
TCGA Data PortalCT55 
Broad Tumor PortalCT55
OASIS PortalCT55 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT55
BioMutasearch CT55
DgiDB (Drug Gene Interaction Database)CT55
DoCM (Curated mutations)CT55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT55 (select a term)
intoGenCT55
Cancer3DCT55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCT55
Genetic Testing Registry CT55
NextProtQ8WUE5 [Medical]
TSGene54967
GENETestsCT55
Target ValidationCT55
Huge Navigator CT55 [HugePedia]
snp3D : Map Gene to Disease54967
BioCentury BCIQCT55
ClinGenCT55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54967
Chemical/Pharm GKB GenePA134977669
Clinical trialCT55
Miscellaneous
canSAR (ICR)CT55 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT55
EVEXCT55
GoPubMedCT55
iHOPCT55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:58:50 CEST 2017

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