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CT62 (cancer/testis antigen 62)

Identity

Other alias-
HGNC (Hugo) CT62
LocusID (NCBI) 196993
Atlas_Id 51089
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 71110244 and ends at 71115500 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT62   27286
Cards
Entrez_Gene (NCBI)CT62  196993  cancer/testis antigen 62
Aliases
GeneCards (Weizmann)CT62
Ensembl hg19 (Hinxton)ENSG00000225362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225362 [Gene_View]  chr15:71110244-71115500 [Contig_View]  CT62 [Vega]
ICGC DataPortalENSG00000225362
TCGA cBioPortalCT62
AceView (NCBI)CT62
Genatlas (Paris)CT62
WikiGenes196993
SOURCE (Princeton)CT62
Genetics Home Reference (NIH)CT62
Genomic and cartography
GoldenPath hg38 (UCSC)CT62  -     chr15:71110244-71115500 -  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT62  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblCT62 - 15q23 [CytoView hg19]  CT62 - 15q23 [CytoView hg38]
Mapping of homologs : NCBICT62 [Mapview hg19]  CT62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA453520 AL080151 BC039359 BC048128 DB443655
RefSeq transcript (Entrez)NM_001102658
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT62
Cluster EST : UnigeneHs.646533 [ NCBI ]
CGAP (NCI)Hs.646533
Alternative Splicing GalleryENSG00000225362
Gene ExpressionCT62 [ NCBI-GEO ]   CT62 [ EBI - ARRAY_EXPRESS ]   CT62 [ SEEK ]   CT62 [ MEM ]
Gene Expression Viewer (FireBrowse)CT62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196993
GTEX Portal (Tissue expression)CT62
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C5K7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C5K7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C5K7
Splice isoforms : SwissVarP0C5K7
PhosPhoSitePlusP0C5K7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CT62
DMDM Disease mutations196993
Blocks (Seattle)CT62
SuperfamilyP0C5K7
Human Protein AtlasENSG00000225362
Peptide AtlasP0C5K7
IPIIPI00855776   
Protein Interaction databases
DIP (DOE-UCLA)P0C5K7
IntAct (EBI)P0C5K7
FunCoupENSG00000225362
BioGRIDCT62
STRING (EMBL)CT62
ZODIACCT62
Ontologies - Pathways
QuickGOP0C5K7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT62
Atlas of Cancer Signalling NetworkCT62
Wikipedia pathwaysCT62
Orthology - Evolution
OrthoDB196993
GeneTree (enSembl)ENSG00000225362
Phylogenetic Trees/Animal Genes : TreeFamCT62
HOVERGENP0C5K7
HOGENOMP0C5K7
Homologs : HomoloGeneCT62
Homology/Alignments : Family Browser (UCSC)CT62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT62
dbVarCT62
ClinVarCT62
1000_GenomesCT62 
Exome Variant ServerCT62
ExAC (Exome Aggregation Consortium)CT62 (select the gene name)
Genetic variants : HAPMAP196993
Genomic Variants (DGV)CT62 [DGVbeta]
DECIPHERCT62 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT62 
Mutations
ICGC Data PortalCT62 
TCGA Data PortalCT62 
Broad Tumor PortalCT62
OASIS PortalCT62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT62
DgiDB (Drug Gene Interaction Database)CT62
DoCM (Curated mutations)CT62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT62 (select a term)
intoGenCT62
Cancer3DCT62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCT62
Genetic Testing Registry CT62
NextProtP0C5K7 [Medical]
TSGene196993
GENETestsCT62
Target ValidationCT62
Huge Navigator CT62 [HugePedia]
snp3D : Map Gene to Disease196993
BioCentury BCIQCT62
ClinGenCT62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196993
Chemical/Pharm GKB GenePA165478559
Clinical trialCT62
Miscellaneous
canSAR (ICR)CT62 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT62
EVEXCT62
GoPubMedCT62
iHOPCT62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:04:08 CEST 2017

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