Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CT83 (cancer/testis antigen 83)

Identity

Alias (NCBI)CXorf61
KK-LC-1
KKLC1
HGNC (Hugo) CT83
HGNC Alias symbKK-LC-1
FLJ20611
FLJ22913
HGNC Alias nameKita-kyushu lung cancer antigen 1
HGNC Previous nameCXorf61
HGNC Previous namechromosome X open reading frame 61
LocusID (NCBI) 203413
Atlas_Id 53718
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 116461686 and ends at 116462976 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CT83   33494
Cards
Entrez_Gene (NCBI)CT83    cancer/testis antigen 83
AliasesCXorf61; KK-LC-1; KKLC1
GeneCards (Weizmann)CT83
Ensembl hg19 (Hinxton)ENSG00000204019 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204019 [Gene_View]  ENSG00000204019 [Sequence]  chrX:116461686-116462976 [Contig_View]  CT83 [Vega]
ICGC DataPortalENSG00000204019
TCGA cBioPortalCT83
AceView (NCBI)CT83
Genatlas (Paris)CT83
SOURCE (Princeton)CT83
Genetics Home Reference (NIH)CT83
Genomic and cartography
GoldenPath hg38 (UCSC)CT83  -     chrX:116461686-116462976 -  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT83  -     Xq23   [Description]    (hg19-Feb_2009)
GoldenPathCT83 - Xq23 [CytoView hg19]  CT83 - Xq23 [CytoView hg38]
ImmunoBaseENSG00000204019
genome Data Viewer NCBICT83 [Mapview hg19]  
OMIM300625   
Gene and transcription
Genbank (Entrez)AK000618 AK026566 BC062223 HY170569
RefSeq transcript (Entrez)NM_001017978
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT83
Alternative Splicing GalleryENSG00000204019
Gene ExpressionCT83 [ NCBI-GEO ]   CT83 [ EBI - ARRAY_EXPRESS ]   CT83 [ SEEK ]   CT83 [ MEM ]
Gene Expression Viewer (FireBrowse)CT83 [ Firebrowse - Broad ]
GenevisibleExpression of CT83 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203413
GTEX Portal (Tissue expression)CT83
Human Protein AtlasENSG00000204019-CT83 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H943   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H943  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H943
Splice isoforms : SwissVarQ5H943
PhosPhoSitePlusQ5H943
Domains : Interpro (EBI)KKLCAg1   
Domain families : Pfam (Sanger)KKLCAg1 (PF15204)   
Domain families : Pfam (NCBI)pfam15204   
Conserved Domain (NCBI)CT83
Blocks (Seattle)CT83
SuperfamilyQ5H943
Human Protein Atlas [tissue]ENSG00000204019-CT83 [tissue]
Peptide AtlasQ5H943
HPRD18577
IPIIPI00142919   
Protein Interaction databases
DIP (DOE-UCLA)Q5H943
IntAct (EBI)Q5H943
BioGRIDCT83
STRING (EMBL)CT83
ZODIACCT83
Ontologies - Pathways
QuickGOQ5H943
Ontology : AmiGOnucleus  plasma membrane  integral component of membrane  
Ontology : EGO-EBInucleus  plasma membrane  integral component of membrane  
NDEx NetworkCT83
Atlas of Cancer Signalling NetworkCT83
Wikipedia pathwaysCT83
Orthology - Evolution
OrthoDB203413
GeneTree (enSembl)ENSG00000204019
Phylogenetic Trees/Animal Genes : TreeFamCT83
HOGENOMQ5H943
Homologs : HomoloGeneCT83
Homology/Alignments : Family Browser (UCSC)CT83
Gene fusions - Rearrangements
Fusion : QuiverCT83
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT83 [hg38]
dbVarCT83
ClinVarCT83
MonarchCT83
1000_GenomesCT83 
Exome Variant ServerCT83
GNOMAD BrowserENSG00000204019
Varsome BrowserCT83
Genomic Variants (DGV)CT83 [DGVbeta]
DECIPHERCT83 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT83 
Mutations
ICGC Data PortalCT83 
TCGA Data PortalCT83 
Broad Tumor PortalCT83
OASIS PortalCT83 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT83  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCT83
Mutations and Diseases : HGMDCT83
BioMutasearch CT83
DgiDB (Drug Gene Interaction Database)CT83
DoCM (Curated mutations)CT83 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT83 (select a term)
intoGenCT83
Cancer3DCT83(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300625   
Orphanet
DisGeNETCT83
MedgenCT83
Genetic Testing Registry CT83
NextProtQ5H943 [Medical]
GENETestsCT83
Target ValidationCT83
Huge Navigator CT83 [HugePedia]
ClinGenCT83
Clinical trials, drugs, therapy
MyCancerGenomeCT83
Protein Interactions : CTD
Pharm GKB GenePA162383081
PharosQ5H943
Clinical trialCT83
Miscellaneous
canSAR (ICR)CT83 (select the gene name)
HarmonizomeCT83
DataMed IndexCT83
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCT83
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:11:44 CET 2021

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