Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CT83 (cancer/testis antigen 83)

Identity

Alias_namesCXorf61
chromosome X open reading frame 61
Alias_symbol (synonym)KK-LC-1
FLJ20611
FLJ22913
Other aliasKKLC1
HGNC (Hugo) CT83
LocusID (NCBI) 203413
Atlas_Id 53718
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 116461686 and ends at 116463033 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT83   33494
Cards
Entrez_Gene (NCBI)CT83  203413  cancer/testis antigen 83
AliasesCXorf61; KK-LC-1; KKLC1
GeneCards (Weizmann)CT83
Ensembl hg19 (Hinxton)ENSG00000204019 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204019 [Gene_View]  chrX:116461686-116463033 [Contig_View]  CT83 [Vega]
ICGC DataPortalENSG00000204019
TCGA cBioPortalCT83
AceView (NCBI)CT83
Genatlas (Paris)CT83
WikiGenes203413
SOURCE (Princeton)CT83
Genetics Home Reference (NIH)CT83
Genomic and cartography
GoldenPath hg38 (UCSC)CT83  -     chrX:116461686-116463033 -  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT83  -     Xq23   [Description]    (hg19-Feb_2009)
EnsemblCT83 - Xq23 [CytoView hg19]  CT83 - Xq23 [CytoView hg38]
Mapping of homologs : NCBICT83 [Mapview hg19]  CT83 [Mapview hg38]
OMIM300625   
Gene and transcription
Genbank (Entrez)AK000618 AK026566 BC062223 HY170569
RefSeq transcript (Entrez)NM_001017978
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT83
Cluster EST : UnigeneHs.97892 [ NCBI ]
CGAP (NCI)Hs.97892
Alternative Splicing GalleryENSG00000204019
Gene ExpressionCT83 [ NCBI-GEO ]   CT83 [ EBI - ARRAY_EXPRESS ]   CT83 [ SEEK ]   CT83 [ MEM ]
Gene Expression Viewer (FireBrowse)CT83 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203413
GTEX Portal (Tissue expression)CT83
Human Protein AtlasENSG00000204019-CT83 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H943   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H943  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H943
Splice isoforms : SwissVarQ5H943
PhosPhoSitePlusQ5H943
Domains : Interpro (EBI)KKLCAg1   
Domain families : Pfam (Sanger)KKLCAg1 (PF15204)   
Domain families : Pfam (NCBI)pfam15204   
Conserved Domain (NCBI)CT83
DMDM Disease mutations203413
Blocks (Seattle)CT83
SuperfamilyQ5H943
Human Protein Atlas [tissue]ENSG00000204019-CT83 [tissue]
Peptide AtlasQ5H943
HPRD18577
IPIIPI00142919   
Protein Interaction databases
DIP (DOE-UCLA)Q5H943
IntAct (EBI)Q5H943
FunCoupENSG00000204019
BioGRIDCT83
STRING (EMBL)CT83
ZODIACCT83
Ontologies - Pathways
QuickGOQ5H943
Ontology : AmiGOnucleus  plasma membrane  integral component of membrane  
Ontology : EGO-EBInucleus  plasma membrane  integral component of membrane  
NDEx NetworkCT83
Atlas of Cancer Signalling NetworkCT83
Wikipedia pathwaysCT83
Orthology - Evolution
OrthoDB203413
GeneTree (enSembl)ENSG00000204019
Phylogenetic Trees/Animal Genes : TreeFamCT83
HOVERGENQ5H943
HOGENOMQ5H943
Homologs : HomoloGeneCT83
Homology/Alignments : Family Browser (UCSC)CT83
Gene fusions - Rearrangements
Tumor Fusion PortalCT83
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT83 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT83
dbVarCT83
ClinVarCT83
1000_GenomesCT83 
Exome Variant ServerCT83
ExAC (Exome Aggregation Consortium)ENSG00000204019
GNOMAD BrowserENSG00000204019
Genetic variants : HAPMAP203413
Genomic Variants (DGV)CT83 [DGVbeta]
DECIPHERCT83 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT83 
Mutations
ICGC Data PortalCT83 
TCGA Data PortalCT83 
Broad Tumor PortalCT83
OASIS PortalCT83 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT83
BioMutasearch CT83
DgiDB (Drug Gene Interaction Database)CT83
DoCM (Curated mutations)CT83 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT83 (select a term)
intoGenCT83
Cancer3DCT83(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300625   
Orphanet
DisGeNETCT83
MedgenCT83
Genetic Testing Registry CT83
NextProtQ5H943 [Medical]
TSGene203413
GENETestsCT83
Target ValidationCT83
Huge Navigator CT83 [HugePedia]
snp3D : Map Gene to Disease203413
BioCentury BCIQCT83
ClinGenCT83
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203413
Chemical/Pharm GKB GenePA162383081
Clinical trialCT83
Miscellaneous
canSAR (ICR)CT83 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT83
EVEXCT83
GoPubMedCT83
iHOPCT83
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:09:22 CET 2017

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