Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CTAG1A (cancer/testis antigen 1A)

Identity

Alias_symbol (synonym)LAGE2A
ESO1
Other aliasCT6.1
LAGE-2
NY-ESO-1
HGNC (Hugo) CTAG1A
LocusID (NCBI) 246100
Atlas_Id 41112
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154585154 and ends at 154586816 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTAG1A   24198
Cards
Entrez_Gene (NCBI)CTAG1A  246100  cancer/testis antigen 1A
AliasesCT6.1; ESO1; LAGE-2; LAGE2A; 
NY-ESO-1
GeneCards (Weizmann)CTAG1A
Ensembl hg19 (Hinxton)ENSG00000268651 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268651 [Gene_View]  chrX:154585154-154586816 [Contig_View]  CTAG1A [Vega]
ICGC DataPortalENSG00000268651
TCGA cBioPortalCTAG1A
AceView (NCBI)CTAG1A
Genatlas (Paris)CTAG1A
WikiGenes246100
SOURCE (Princeton)CTAG1A
Genetics Home Reference (NIH)CTAG1A
Genomic and cartography
GoldenPath hg38 (UCSC)CTAG1A  -     chrX:154585154-154586816 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTAG1A  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblCTAG1A - Xq28 [CytoView hg19]  CTAG1A - Xq28 [CytoView hg38]
Mapping of homologs : NCBICTAG1A [Mapview hg19]  CTAG1A [Mapview hg38]
OMIM300657   
Gene and transcription
Genbank (Entrez)AF038567 AF038567 AJ003149 AJ275978 BC130362
RefSeq transcript (Entrez)NM_139250
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTAG1A
Cluster EST : UnigeneHs.534310 [ NCBI ]
CGAP (NCI)Hs.534310
Alternative Splicing GalleryENSG00000268651
Gene ExpressionCTAG1A [ NCBI-GEO ]   CTAG1A [ EBI - ARRAY_EXPRESS ]   CTAG1A [ SEEK ]   CTAG1A [ MEM ]
Gene Expression Viewer (FireBrowse)CTAG1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)246100
GTEX Portal (Tissue expression)CTAG1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78358   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78358  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78358
Splice isoforms : SwissVarP78358
PhosPhoSitePlusP78358
Domains : Interpro (EBI)CTAG/Pcc1   
Domain families : Pfam (Sanger)Pcc1 (PF09341)   
Domain families : Pfam (NCBI)pfam09341   
Conserved Domain (NCBI)CTAG1A
DMDM Disease mutations246100
Blocks (Seattle)CTAG1A
PDB (SRS)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA   
PDB (PDBSum)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA   
PDB (IMB)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA   
PDB (RSDB)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA   
Structural Biology KnowledgeBase1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA   
SCOP (Structural Classification of Proteins)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA   
CATH (Classification of proteins structures)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA   
SuperfamilyP78358
Human Protein AtlasENSG00000268651
Peptide AtlasP78358
HPRD06607
Protein Interaction databases
DIP (DOE-UCLA)P78358
IntAct (EBI)P78358
FunCoupENSG00000268651
BioGRIDCTAG1A
STRING (EMBL)CTAG1A
ZODIACCTAG1A
Ontologies - Pathways
QuickGOP78358
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkCTAG1A
Atlas of Cancer Signalling NetworkCTAG1A
Wikipedia pathwaysCTAG1A
Orthology - Evolution
OrthoDB246100
GeneTree (enSembl)ENSG00000268651
Phylogenetic Trees/Animal Genes : TreeFamCTAG1A
HOVERGENP78358
HOGENOMP78358
Homologs : HomoloGeneCTAG1A
Homology/Alignments : Family Browser (UCSC)CTAG1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTAG1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTAG1A
dbVarCTAG1A
ClinVarCTAG1A
1000_GenomesCTAG1A 
Exome Variant ServerCTAG1A
ExAC (Exome Aggregation Consortium)CTAG1A (select the gene name)
Genetic variants : HAPMAP246100
Genomic Variants (DGV)CTAG1A [DGVbeta]
DECIPHERCTAG1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTAG1A 
Mutations
ICGC Data PortalCTAG1A 
TCGA Data PortalCTAG1A 
Broad Tumor PortalCTAG1A
OASIS PortalCTAG1A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCTAG1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTAG1A
DgiDB (Drug Gene Interaction Database)CTAG1A
DoCM (Curated mutations)CTAG1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTAG1A (select a term)
intoGenCTAG1A
Cancer3DCTAG1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300657   
Orphanet
MedgenCTAG1A
Genetic Testing Registry CTAG1A
NextProtP78358 [Medical]
TSGene246100
GENETestsCTAG1A
Target ValidationCTAG1A
Huge Navigator CTAG1A [HugePedia]
snp3D : Map Gene to Disease246100
BioCentury BCIQCTAG1A
ClinGenCTAG1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD246100
Chemical/Pharm GKB GenePA134979749
Clinical trialCTAG1A
Miscellaneous
canSAR (ICR)CTAG1A (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTAG1A
EVEXCTAG1A
GoPubMedCTAG1A
iHOPCTAG1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:29:56 CEST 2017

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