Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CTAG1B (cancer/testis antigen 1B)

Identity

Alias_namesCTAG
CTAG1
cancer/testis antigen 1
Alias_symbol (synonym)NY-ESO-1
LAGE2B
LAGE2A
ESO1
CT6.1
Other aliasLAGE-2
HGNC (Hugo) CTAG1B
LocusID (NCBI) 1485
Atlas_Id 514
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154585154 and ends at 154586816 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Testis: Spermatocytic seminoma

External links

Nomenclature
HGNC (Hugo)CTAG1B   2491
Cards
Entrez_Gene (NCBI)CTAG1B  1485  cancer/testis antigen 1B
AliasesCT6.1; CTAG; CTAG1; ESO1; 
LAGE-2; LAGE2B; NY-ESO-1
GeneCards (Weizmann)CTAG1B
Ensembl hg19 (Hinxton)ENSG00000184033 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184033 [Gene_View]  ENSG00000184033 [Sequence]  chrX:154585154-154586816 [Contig_View]  CTAG1B [Vega]
ICGC DataPortalENSG00000184033
TCGA cBioPortalCTAG1B
AceView (NCBI)CTAG1B
Genatlas (Paris)CTAG1B
WikiGenes1485
SOURCE (Princeton)CTAG1B
Genetics Home Reference (NIH)CTAG1B
Genomic and cartography
GoldenPath hg38 (UCSC)CTAG1B  -     chrX:154585154-154586816 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTAG1B  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblCTAG1B - Xq28 [CytoView hg19]  CTAG1B - Xq28 [CytoView hg38]
Mapping of homologs : NCBICTAG1B [Mapview hg19]  CTAG1B [Mapview hg38]
OMIM300156   
Gene and transcription
Genbank (Entrez)AF038567 AF038567 AJ003149 AJ275978 BC130362
RefSeq transcript (Entrez)NM_001327
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTAG1B
Cluster EST : UnigeneHs.745351 [ NCBI ]
CGAP (NCI)Hs.745351
Alternative Splicing GalleryENSG00000184033
Gene ExpressionCTAG1B [ NCBI-GEO ]   CTAG1B [ EBI - ARRAY_EXPRESS ]   CTAG1B [ SEEK ]   CTAG1B [ MEM ]
Gene Expression Viewer (FireBrowse)CTAG1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1485
GTEX Portal (Tissue expression)CTAG1B
Human Protein AtlasENSG00000184033-CTAG1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78358   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78358  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78358
Splice isoforms : SwissVarP78358
PhosPhoSitePlusP78358
Domains : Interpro (EBI)CTAG/Pcc1   
Domain families : Pfam (Sanger)Pcc1 (PF09341)   
Domain families : Pfam (NCBI)pfam09341   
Conserved Domain (NCBI)CTAG1B
DMDM Disease mutations1485
Blocks (Seattle)CTAG1B
PDB (SRS)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA    6AT5   
PDB (PDBSum)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA    6AT5   
PDB (IMB)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA    6AT5   
PDB (RSDB)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA    6AT5   
Structural Biology KnowledgeBase1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA    6AT5   
SCOP (Structural Classification of Proteins)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA    6AT5   
CATH (Classification of proteins structures)1S9W    2BNQ    2BNR    2F53    2F54    2P5E    2P5W    2PYE    3GJF    3HAE    3KLA    6AT5   
SuperfamilyP78358
Human Protein Atlas [tissue]ENSG00000184033-CTAG1B [tissue]
Peptide AtlasP78358
HPRD02151
IPIIPI00019217   IPI00386104   IPI00940192   IPI00383605   
Protein Interaction databases
DIP (DOE-UCLA)P78358
IntAct (EBI)P78358
FunCoupENSG00000184033
BioGRIDCTAG1B
STRING (EMBL)CTAG1B
ZODIACCTAG1B
Ontologies - Pathways
QuickGOP78358
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkCTAG1B
Atlas of Cancer Signalling NetworkCTAG1B
Wikipedia pathwaysCTAG1B
Orthology - Evolution
OrthoDB1485
GeneTree (enSembl)ENSG00000184033
Phylogenetic Trees/Animal Genes : TreeFamCTAG1B
HOVERGENP78358
HOGENOMP78358
Homologs : HomoloGeneCTAG1B
Homology/Alignments : Family Browser (UCSC)CTAG1B
Gene fusions - Rearrangements
Fusion : QuiverCTAG1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTAG1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTAG1B
dbVarCTAG1B
ClinVarCTAG1B
1000_GenomesCTAG1B 
Exome Variant ServerCTAG1B
ExAC (Exome Aggregation Consortium)ENSG00000184033
GNOMAD BrowserENSG00000184033
Varsome BrowserCTAG1B
Genetic variants : HAPMAP1485
Genomic Variants (DGV)CTAG1B [DGVbeta]
DECIPHERCTAG1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTAG1B 
Mutations
ICGC Data PortalCTAG1B 
TCGA Data PortalCTAG1B 
Broad Tumor PortalCTAG1B
OASIS PortalCTAG1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTAG1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTAG1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTAG1B
DgiDB (Drug Gene Interaction Database)CTAG1B
DoCM (Curated mutations)CTAG1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTAG1B (select a term)
intoGenCTAG1B
Cancer3DCTAG1B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300156   
Orphanet
DisGeNETCTAG1B
MedgenCTAG1B
Genetic Testing Registry CTAG1B
NextProtP78358 [Medical]
TSGene1485
GENETestsCTAG1B
Target ValidationCTAG1B
Huge Navigator CTAG1B [HugePedia]
snp3D : Map Gene to Disease1485
BioCentury BCIQCTAG1B
ClinGenCTAG1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1485
Chemical/Pharm GKB GenePA26993
Clinical trialCTAG1B
Miscellaneous
canSAR (ICR)CTAG1B (select the gene name)
Probes
Litterature
PubMed97 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTAG1B
EVEXCTAG1B
GoPubMedCTAG1B
iHOPCTAG1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Aug 16 10:56:12 CEST 2018
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