Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CTAG2 (cancer/testis antigen 2)

Identity

Alias_symbol (synonym)LAGE-1
CAMEL
LAGE1
ESO2
MGC3803
MGC138724
CT6.2a
CT6.2b
LAGE-1a
LAGE-1b
Other aliasCT2
CT6.2
LAGE2B
HGNC (Hugo) CTAG2
LocusID (NCBI) 30848
Atlas_Id 40184
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154651972 and ends at 154653579 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTAG2   2492
Cards
Entrez_Gene (NCBI)CTAG2  30848  cancer/testis antigen 2
AliasesCAMEL; CT2; CT6.2; CT6.2a; 
CT6.2b; ESO2; LAGE-1; LAGE2B
GeneCards (Weizmann)CTAG2
Ensembl hg19 (Hinxton)ENSG00000126890 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126890 [Gene_View]  chrX:154651972-154653579 [Contig_View]  CTAG2 [Vega]
ICGC DataPortalENSG00000126890
TCGA cBioPortalCTAG2
AceView (NCBI)CTAG2
Genatlas (Paris)CTAG2
WikiGenes30848
SOURCE (Princeton)CTAG2
Genetics Home Reference (NIH)CTAG2
Genomic and cartography
GoldenPath hg38 (UCSC)CTAG2  -     chrX:154651972-154653579 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTAG2  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblCTAG2 - Xq28 [CytoView hg19]  CTAG2 - Xq28 [CytoView hg38]
Mapping of homologs : NCBICTAG2 [Mapview hg19]  CTAG2 [Mapview hg38]
OMIM300396   
Gene and transcription
Genbank (Entrez)AJ012833 AJ012834 AJ012834 AJ012835 AJ012835
RefSeq transcript (Entrez)NM_020994 NM_172377
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTAG2
Cluster EST : UnigeneHs.713312 [ NCBI ]
CGAP (NCI)Hs.713312
Alternative Splicing GalleryENSG00000126890
Gene ExpressionCTAG2 [ NCBI-GEO ]   CTAG2 [ EBI - ARRAY_EXPRESS ]   CTAG2 [ SEEK ]   CTAG2 [ MEM ]
Gene Expression Viewer (FireBrowse)CTAG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30848
GTEX Portal (Tissue expression)CTAG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75638   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75638  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75638
Splice isoforms : SwissVarO75638
PhosPhoSitePlusO75638
Domains : Interpro (EBI)CTAG/Pcc1   
Domain families : Pfam (Sanger)Pcc1 (PF09341)   
Domain families : Pfam (NCBI)pfam09341   
Conserved Domain (NCBI)CTAG2
DMDM Disease mutations30848
Blocks (Seattle)CTAG2
SuperfamilyO75638
Human Protein AtlasENSG00000126890
Peptide AtlasO75638
HPRD02318
IPIIPI00294635   IPI00218262   IPI00843877   IPI00001503   
Protein Interaction databases
DIP (DOE-UCLA)O75638
IntAct (EBI)O75638
FunCoupENSG00000126890
BioGRIDCTAG2
STRING (EMBL)CTAG2
ZODIACCTAG2
Ontologies - Pathways
QuickGOO75638
Ontology : AmiGOmolecular_function  protein binding  centrosome  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  centrosome  biological_process  
NDEx NetworkCTAG2
Atlas of Cancer Signalling NetworkCTAG2
Wikipedia pathwaysCTAG2
Orthology - Evolution
OrthoDB30848
GeneTree (enSembl)ENSG00000126890
Phylogenetic Trees/Animal Genes : TreeFamCTAG2
HOVERGENO75638
HOGENOMO75638
Homologs : HomoloGeneCTAG2
Homology/Alignments : Family Browser (UCSC)CTAG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTAG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTAG2
dbVarCTAG2
ClinVarCTAG2
1000_GenomesCTAG2 
Exome Variant ServerCTAG2
ExAC (Exome Aggregation Consortium)CTAG2 (select the gene name)
Genetic variants : HAPMAP30848
Genomic Variants (DGV)CTAG2 [DGVbeta]
DECIPHERCTAG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTAG2 
Mutations
ICGC Data PortalCTAG2 
TCGA Data PortalCTAG2 
Broad Tumor PortalCTAG2
OASIS PortalCTAG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTAG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTAG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CTAG2
DgiDB (Drug Gene Interaction Database)CTAG2
DoCM (Curated mutations)CTAG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTAG2 (select a term)
intoGenCTAG2
Cancer3DCTAG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300396   
Orphanet
MedgenCTAG2
Genetic Testing Registry CTAG2
NextProtO75638 [Medical]
TSGene30848
GENETestsCTAG2
Target ValidationCTAG2
Huge Navigator CTAG2 [HugePedia]
snp3D : Map Gene to Disease30848
BioCentury BCIQCTAG2
ClinGenCTAG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD30848
Chemical/Pharm GKB GenePA26994
Clinical trialCTAG2
Miscellaneous
canSAR (ICR)CTAG2 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTAG2
EVEXCTAG2
GoPubMedCTAG2
iHOPCTAG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:04:09 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.