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CTAGE1 (cutaneous T cell lymphoma-associated antigen 1)

Identity

Alias (NCBI)CT21.1
CT21.2
CTAGE
CTAGE-1
CTAGE-2
HGNC (Hugo) CTAGE1
HGNC Alias symbcTAGE-1
cTAGE-2
CTAGE
CT21.1
CT21.2
HGNC Alias namecutaneous T-cell lymphoma-associated antigen 1
 cutaneous T-cell lymphoma-associated antigen 2
 cancer/testis antigen family 21, member 1
 cancer/testis antigen family 21, member 2
HGNC Previous namecutaneous T-cell lymphoma-associated antigen 1
LocusID (NCBI) 64693
Atlas_Id 42913
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 22413599 and ends at 22417915 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CTAGE1   24346
Cards
Entrez_Gene (NCBI)CTAGE1    cutaneous T cell lymphoma-associated antigen 1
AliasesCT21.1; CT21.2; CTAGE; CTAGE-1; 
CTAGE-2
GeneCards (Weizmann)CTAGE1
Ensembl hg19 (Hinxton)ENSG00000212710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212710 [Gene_View]  ENSG00000212710 [Sequence]  chr18:22413599-22417915 [Contig_View]  CTAGE1 [Vega]
ICGC DataPortalENSG00000212710
TCGA cBioPortalCTAGE1
AceView (NCBI)CTAGE1
Genatlas (Paris)CTAGE1
SOURCE (Princeton)CTAGE1
Genetics Home Reference (NIH)CTAGE1
Genomic and cartography
GoldenPath hg38 (UCSC)CTAGE1  -     chr18:22413599-22417915 -  18q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTAGE1  -     18q11.2   [Description]    (hg19-Feb_2009)
GoldenPathCTAGE1 - 18q11.2 [CytoView hg19]  CTAGE1 - 18q11.2 [CytoView hg38]
ImmunoBaseENSG00000212710
genome Data Viewer NCBICTAGE1 [Mapview hg19]  
OMIM608856   
Gene and transcription
Genbank (Entrez)AF177229 AF273058 BC031065 BC070128 BC132871
RefSeq transcript (Entrez)NM_022663 NM_172241
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTAGE1
Alternative Splicing GalleryENSG00000212710
Gene ExpressionCTAGE1 [ NCBI-GEO ]   CTAGE1 [ EBI - ARRAY_EXPRESS ]   CTAGE1 [ SEEK ]   CTAGE1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTAGE1 [ Firebrowse - Broad ]
GenevisibleExpression of CTAGE1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64693
GTEX Portal (Tissue expression)CTAGE1
Human Protein AtlasENSG00000212710-CTAGE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC47   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC47  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC47
Splice isoforms : SwissVarQ9HC47
PhosPhoSitePlusQ9HC47
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTAGE1
Blocks (Seattle)CTAGE1
SuperfamilyQ9HC47
Human Protein Atlas [tissue]ENSG00000212710-CTAGE1 [tissue]
Peptide AtlasQ9HC47
HPRD16395
IPIIPI00400827   IPI00006966   
Protein Interaction databases
DIP (DOE-UCLA)Q9HC47
IntAct (EBI)Q9HC47
BioGRIDCTAGE1
STRING (EMBL)CTAGE1
ZODIACCTAGE1
Ontologies - Pathways
QuickGOQ9HC47
Ontology : AmiGOcellular_component  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  biological_process  protein secretion  integral component of membrane  cargo loading into vesicle  endoplasmic reticulum exit site  
Ontology : EGO-EBIcellular_component  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  biological_process  protein secretion  integral component of membrane  cargo loading into vesicle  endoplasmic reticulum exit site  
NDEx NetworkCTAGE1
Atlas of Cancer Signalling NetworkCTAGE1
Wikipedia pathwaysCTAGE1
Orthology - Evolution
OrthoDB64693
GeneTree (enSembl)ENSG00000212710
Phylogenetic Trees/Animal Genes : TreeFamCTAGE1
HOGENOMQ9HC47
Homologs : HomoloGeneCTAGE1
Homology/Alignments : Family Browser (UCSC)CTAGE1
Gene fusions - Rearrangements
Fusion : QuiverCTAGE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTAGE1 [hg38]
dbVarCTAGE1
ClinVarCTAGE1
MonarchCTAGE1
1000_GenomesCTAGE1 
Exome Variant ServerCTAGE1
GNOMAD BrowserENSG00000212710
Varsome BrowserCTAGE1
Genomic Variants (DGV)CTAGE1 [DGVbeta]
DECIPHERCTAGE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTAGE1 
Mutations
ICGC Data PortalCTAGE1 
TCGA Data PortalCTAGE1 
Broad Tumor PortalCTAGE1
OASIS PortalCTAGE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTAGE1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCTAGE1
Mutations and Diseases : HGMDCTAGE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTAGE1
DgiDB (Drug Gene Interaction Database)CTAGE1
DoCM (Curated mutations)CTAGE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTAGE1 (select a term)
intoGenCTAGE1
Cancer3DCTAGE1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608856   
Orphanet
DisGeNETCTAGE1
MedgenCTAGE1
Genetic Testing Registry CTAGE1
NextProtQ9HC47 [Medical]
GENETestsCTAGE1
Target ValidationCTAGE1
Huge Navigator CTAGE1 [HugePedia]
ClinGenCTAGE1
Clinical trials, drugs, therapy
MyCancerGenomeCTAGE1
Protein Interactions : CTD
Pharm GKB GenePA134933936
PharosQ9HC47
Clinical trialCTAGE1
Miscellaneous
canSAR (ICR)CTAGE1 (select the gene name)
HarmonizomeCTAGE1
DataMed IndexCTAGE1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCTAGE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:11:45 CET 2021

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