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CTAGE1 (cutaneous T-cell lymphoma-associated antigen 1)

Identity

Other namesCT21.1
CT21.2
CTAGE
CTAGE-1
CTAGE-2
HGNC (Hugo) CTAGE1
LocusID (NCBI) 64693
Atlas_Id 42913
Location 18q11.2
Location_base_pair Starts at 19993564 and ends at 19997878 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CTAGE1   24346
Cards
Entrez_Gene (NCBI)CTAGE1  64693  cutaneous T-cell lymphoma-associated antigen 1
GeneCards (Weizmann)CTAGE1
Ensembl hg19 (Hinxton)ENSG00000212710 [Gene_View]  chr18:19993564-19997878 [Contig_View]  CTAGE1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000212710 [Gene_View]  chr18:19993564-19997878 [Contig_View]  CTAGE1 [Vega]
ICGC DataPortalENSG00000212710
TCGA cBioPortalCTAGE1
AceView (NCBI)CTAGE1
Genatlas (Paris)CTAGE1
WikiGenes64693
SOURCE (Princeton)CTAGE1
Genomic and cartography
GoldenPath hg19 (UCSC)CTAGE1  -     chr18:19993564-19997878 -  18q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTAGE1  -     18q11.2   [Description]    (hg38-Dec_2013)
EnsemblCTAGE1 - 18q11.2 [CytoView hg19]  CTAGE1 - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBICTAGE1 [Mapview hg19]  CTAGE1 [Mapview hg38]
OMIM608856   
Gene and transcription
Genbank (Entrez)AF177229 AF273058 BC031065 BC070128 BC132871
RefSeq transcript (Entrez)NM_022663 NM_172241
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)CTAGE1
Cluster EST : UnigeneHs.406709 [ NCBI ]
CGAP (NCI)Hs.406709
Alternative Splicing : Fast-db (Paris)GSHG0014218
Alternative Splicing GalleryENSG00000212710
Gene ExpressionCTAGE1 [ NCBI-GEO ]     CTAGE1 [ SEEK ]   CTAGE1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC47 (Uniprot)
NextProtQ9HC47  [Medical]
With graphics : InterProQ9HC47
Splice isoforms : SwissVarQ9HC47 (Swissvar)
Related proteins : CluSTrQ9HC47
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations64693
Blocks (Seattle)Q9HC47
Human Protein AtlasENSG00000212710
Peptide AtlasQ9HC47
HPRD16395
IPIIPI00400827   IPI00006966   
Protein Interaction databases
DIP (DOE-UCLA)Q9HC47
IntAct (EBI)Q9HC47
FunCoupENSG00000212710
BioGRIDCTAGE1
IntegromeDBCTAGE1
STRING (EMBL)CTAGE1
Ontologies - Pathways
QuickGOQ9HC47
Ontology : AmiGOcellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBIcellular_component  biological_process  integral component of membrane  
Protein Interaction DatabaseCTAGE1
DoCM (Curated mutations)CTAGE1
Wikipedia pathwaysCTAGE1
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerCTAGE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTAGE1
dbVarCTAGE1
ClinVarCTAGE1
1000_GenomesCTAGE1 
Exome Variant ServerCTAGE1
SNP (GeneSNP Utah)CTAGE1
SNP : HGBaseCTAGE1
Genetic variants : HAPMAPCTAGE1
Genomic Variants (DGV)CTAGE1 [DGVbeta]
Mutations
ICGC Data PortalCTAGE1 
TCGA Data PortalCTAGE1 
Tumor PortalCTAGE1
Somatic Mutations in Cancer : COSMICCTAGE1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)18:19993564-19997878
CONAN: Copy Number AnalysisCTAGE1 
Mutations and Diseases : HGMDCTAGE1
OMIM608856   
MedgenCTAGE1
NextProtQ9HC47 [Medical]
GENETestsCTAGE1
Disease Genetic AssociationCTAGE1
Huge Navigator CTAGE1 [HugePedia]  CTAGE1 [HugeCancerGEM]
snp3D : Map Gene to Disease64693
DGIdb (Drug Gene Interaction db)CTAGE1
General knowledge
Homologs : HomoloGeneCTAGE1
Homology/Alignments : Family Browser (UCSC)CTAGE1
Phylogenetic Trees/Animal Genes : TreeFamCTAGE1
Chemical/Protein Interactions : CTD64693
Chemical/Pharm GKB GenePA134933936
Clinical trialCTAGE1
Cancer Resource (Charite)ENSG00000212710
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
CoreMineCTAGE1
GoPubMedCTAGE1
iHOPCTAGE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 14:16:22 CEST 2015

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