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CTAGE1 (cutaneous T-cell lymphoma-associated antigen 1)

Identity

Other namesCT21.1
CT21.2
CTAGE
CTAGE-1
CTAGE-2
HGNC (Hugo) CTAGE1
Location 18q11.2
Location_base_pair Starts at 18247562 and ends at 18251876 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CTAGE1   24346
Entrez_Gene (NCBI)CTAGE1  64693  cutaneous T-cell lymphoma-associated antigen 1
Cards
GeneCards (Weizmann)CTAGE1
Ensembl (Hinxton)ENSG00000212710 [Gene_View]  CTAGE1 [Vega]
AceView (NCBI)CTAGE1
Genatlas (Paris)CTAGE1
euGene (Indiana)64693
SOURCE (Stanford)NM_172241
Gene Expression (Array Express) ENSG00000212710
Genomic and cartography
GoldenPath (UCSC)CTAGE1  -  18q11.2   chr18:18247562-18251876 -  18q11.2   [Description]    (hg18-March_2006)
EnsemblCTAGE1 - 18q11.2 [CytoView]
Mapping of homologs : NCBICTAGE1 [Mapview]
OMIM608856   
Gene and transcription
Gene : Genbank (Entrez)AF177229 AF273058 BC031065 BC070128 BC132871
Reference sequence (RefSeq transcript) :SRSNM_172241
Reference transcript : EntrezNM_172241
RefSeq genomic : SRSAC_000061 AC_000150 NC_000018 NT_010966 NW_001838467 NW_927095
RefSeq genomic : EntrezAC_000061 AC_000150 NC_000018 NT_010966 NW_001838467 NW_927095
Consensus coding sequences : CCDS NCBICTAGE1
Cluster EST : UnigeneHs.406709 [ SRS ] Hs.406709 [ NCBI ]
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9HC47 (SRS) Q9HC47 (Expasy) Q9HC47 (Uniprot)
With graphics : InterProQ9HC47
Splice isoforms : VarSplice FASTAQ9HC47(VarSplice FASTA)
Related proteins : CluSTrQ9HC47
Domain families : Pfam SRS
Domain families : Pfam Sanger
Domain families : Pfam NCBI
Blocks (Seattle)Q9HC47
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD16395
Protein Interaction databases
DIP (DOE-UCLA)Q9HC47
IntAct (EBI)Q9HC47
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBICTAGE1
SNP : GeneSNP UtahCTAGE1
SNP : HGBaseCTAGE1
Genetic variants : HAPMAPCTAGE1
Mutations and Diseases : HGMDCTAGE1
Hereditary diseases : OMIM608856   
Hereditary diseases : GENETests608856   
Diseases : Genetic AssociationCTAGE1
General knowledge
Homologs : HomoloGeneCTAGE1
Homology/Alignments : Family Browser UCSCCTAGE1
Phylogenetic Trees/Animal Genes : TreeFamCTAGE1
Chemical/Protein Interactions : CTD64693
Keywords Ontology : AmiGOcellular_component  biological_process  membrane  integral to membrane  
Keywords Ontology : EGO-EBIcellular_component  biological_process  membrane  integral to membrane  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesCTAGE1 Related clones (RZPD - Berlin)
Literature
PubMed4 Pubmed reference(s) in Entrez
PubGeneCTAGE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:41:58 CET 2010
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