Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CTAGE1 (cutaneous T-cell lymphoma-associated antigen 1)

Identity

Other namesCT21.1
CT21.2
CTAGE
CTAGE-1
CTAGE-2
HGNC (Hugo) CTAGE1
LocusID (NCBI) 64693
Location 18q11.2
Location_base_pair Starts at 19993564 and ends at 19997878 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CTAGE1   24346
Cards
Entrez_Gene (NCBI)CTAGE1  64693  cutaneous T-cell lymphoma-associated antigen 1
GeneCards (Weizmann)CTAGE1
Ensembl (Hinxton)ENSG00000212710 [Gene_View]  chr18:19993564-19997878 [Contig_View]  CTAGE1 [Vega]
ICGC DataPortalENSG00000212710
cBioPortalCTAGE1
AceView (NCBI)CTAGE1
Genatlas (Paris)CTAGE1
WikiGenes64693
SOURCE (Princeton)NM_022663 NM_172241
Genomic and cartography
GoldenPath (UCSC)CTAGE1  -  18q11.2   chr18:19993564-19997878 -  18q11.2   [Description]    (hg19-Feb_2009)
EnsemblCTAGE1 - 18q11.2 [CytoView]
Mapping of homologs : NCBICTAGE1 [Mapview]
OMIM608856   
Gene and transcription
Genbank (Entrez)AF177229 AF273058 BC031065 BC070128 BC132871
RefSeq transcript (Entrez)NM_022663 NM_172241
RefSeq genomic (Entrez)AC_000150 NC_000018 NC_018929 NT_010966 NW_001838467 NW_004929410
Consensus coding sequences : CCDS (NCBI)CTAGE1
Cluster EST : UnigeneHs.406709 [ NCBI ]
CGAP (NCI)Hs.406709
Alternative Splicing : Fast-db (Paris)GSHG0014218
Alternative Splicing GalleryENSG00000212710
Gene ExpressionCTAGE1 [ NCBI-GEO ]     CTAGE1 [ SEEK ]   CTAGE1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC47 (Uniprot)
NextProtQ9HC47  [Medical]
With graphics : InterProQ9HC47
Splice isoforms : SwissVarQ9HC47 (Swissvar)
Related proteins : CluSTrQ9HC47
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations64693
Blocks (Seattle)Q9HC47
Human Protein AtlasENSG00000212710 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9HC47
HPRD16395
IPIIPI00400827   IPI00006966   
Protein Interaction databases
DIP (DOE-UCLA)Q9HC47
IntAct (EBI)Q9HC47
FunCoupENSG00000212710
BioGRIDCTAGE1
InParanoidQ9HC47
Interologous Interaction database Q9HC47
IntegromeDBCTAGE1
STRING (EMBL)CTAGE1
Ontologies - Pathways
Ontology : AmiGOcellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBIcellular_component  biological_process  integral component of membrane  
Protein Interaction DatabaseCTAGE1
Wikipedia pathwaysCTAGE1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CTAGE1
snp3D : Map Gene to Disease64693
SNP (GeneSNP Utah)CTAGE1
SNP : HGBaseCTAGE1
Genetic variants : HAPMAPCTAGE1
Exome VariantCTAGE1
1000_GenomesCTAGE1 
ICGC programENSG00000212710 
Somatic Mutations in Cancer : COSMICCTAGE1 
CONAN: Copy Number AnalysisCTAGE1 
Mutations and Diseases : HGMDCTAGE1
Mutations and Diseases : intOGenCTAGE1
Genomic VariantsCTAGE1  CTAGE1 [DGVbeta]
dbVarCTAGE1
ClinVarCTAGE1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM608856   
MedgenCTAGE1
GENETestsCTAGE1
Disease Genetic AssociationCTAGE1
Huge Navigator CTAGE1 [HugePedia]  CTAGE1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCTAGE1
Homology/Alignments : Family Browser (UCSC)CTAGE1
Phylogenetic Trees/Animal Genes : TreeFamCTAGE1
Chemical/Protein Interactions : CTD64693
Chemical/Pharm GKB GenePA134933936
Clinical trialCTAGE1
Cancer Resource (Charite)ENSG00000212710
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
CoreMineCTAGE1
iHOPCTAGE1
OncoSearchCTAGE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:43:30 CEST 2014

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