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CTAGE15 (CTAGE family member 15)

Identity

Alias_namesCTAGE15P
CTAGE family, member 15, pseudogene
CTAGE family, member 15
Other aliascTAGE-15
HGNC (Hugo) CTAGE15
LocusID (NCBI) 441294
Atlas_Id 62153
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 143571801 and ends at 143574387 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTAGE15   37295
Cards
Entrez_Gene (NCBI)CTAGE15  441294  CTAGE family member 15
AliasesCTAGE15P; cTAGE-15
GeneCards (Weizmann)CTAGE15
Ensembl hg19 (Hinxton)ENSG00000271079 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271079 [Gene_View]  chr7:143571801-143574387 [Contig_View]  CTAGE15 [Vega]
ICGC DataPortalENSG00000271079
TCGA cBioPortalCTAGE15
AceView (NCBI)CTAGE15
Genatlas (Paris)CTAGE15
WikiGenes441294
SOURCE (Princeton)CTAGE15
Genetics Home Reference (NIH)CTAGE15
Genomic and cartography
GoldenPath hg38 (UCSC)CTAGE15  -     chr7:143571801-143574387 +  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTAGE15  -     7q35   [Description]    (hg19-Feb_2009)
EnsemblCTAGE15 - 7q35 [CytoView hg19]  CTAGE15 - 7q35 [CytoView hg38]
Mapping of homologs : NCBICTAGE15 [Mapview hg19]  CTAGE15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC146818 BC150314
RefSeq transcript (Entrez)NM_001008747
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTAGE15
Cluster EST : UnigeneHs.450233 [ NCBI ]
CGAP (NCI)Hs.450233
Alternative Splicing GalleryENSG00000271079
Gene ExpressionCTAGE15 [ NCBI-GEO ]   CTAGE15 [ EBI - ARRAY_EXPRESS ]   CTAGE15 [ SEEK ]   CTAGE15 [ MEM ]
Gene Expression Viewer (FireBrowse)CTAGE15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441294
GTEX Portal (Tissue expression)CTAGE15
Human Protein AtlasENSG00000271079-CTAGE15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D2H0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D2H0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D2H0
Splice isoforms : SwissVarA4D2H0
PhosPhoSitePlusA4D2H0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTAGE15
DMDM Disease mutations441294
Blocks (Seattle)CTAGE15
SuperfamilyA4D2H0
Human Protein Atlas [tissue]ENSG00000271079-CTAGE15 [tissue]
Peptide AtlasA4D2H0
HPRD17404
Protein Interaction databases
DIP (DOE-UCLA)A4D2H0
IntAct (EBI)A4D2H0
FunCoupENSG00000271079
BioGRIDCTAGE15
STRING (EMBL)CTAGE15
ZODIACCTAGE15
Ontologies - Pathways
QuickGOA4D2H0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCTAGE15
Atlas of Cancer Signalling NetworkCTAGE15
Wikipedia pathwaysCTAGE15
Orthology - Evolution
OrthoDB441294
GeneTree (enSembl)ENSG00000271079
Phylogenetic Trees/Animal Genes : TreeFamCTAGE15
HOVERGENA4D2H0
HOGENOMA4D2H0
Homologs : HomoloGeneCTAGE15
Homology/Alignments : Family Browser (UCSC)CTAGE15
Gene fusions - Rearrangements
Tumor Fusion PortalCTAGE15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTAGE15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTAGE15
dbVarCTAGE15
ClinVarCTAGE15
1000_GenomesCTAGE15 
Exome Variant ServerCTAGE15
ExAC (Exome Aggregation Consortium)ENSG00000271079
GNOMAD BrowserENSG00000271079
Genetic variants : HAPMAP441294
Genomic Variants (DGV)CTAGE15 [DGVbeta]
DECIPHERCTAGE15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTAGE15 
Mutations
ICGC Data PortalCTAGE15 
TCGA Data PortalCTAGE15 
Broad Tumor PortalCTAGE15
OASIS PortalCTAGE15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCTAGE15
BioMutasearch CTAGE15
DgiDB (Drug Gene Interaction Database)CTAGE15
DoCM (Curated mutations)CTAGE15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTAGE15 (select a term)
intoGenCTAGE15
Cancer3DCTAGE15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCTAGE15
MedgenCTAGE15
Genetic Testing Registry CTAGE15
NextProtA4D2H0 [Medical]
TSGene441294
GENETestsCTAGE15
Target ValidationCTAGE15
Huge Navigator CTAGE15 [HugePedia]
snp3D : Map Gene to Disease441294
BioCentury BCIQCTAGE15
ClinGenCTAGE15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441294
Chemical/Pharm GKB GenePA166049030
Clinical trialCTAGE15
Miscellaneous
canSAR (ICR)CTAGE15 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTAGE15
EVEXCTAGE15
GoPubMedCTAGE15
iHOPCTAGE15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:15:55 CET 2017

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