Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CTAGE3P (CTAGE family member 3, pseudogene)

Identity

Alias_namesCTAGE3
CTAGE family, member 3
CTAGE family, member 3, pseudogene
Alias_symbol (synonym)cTAGE-3
Other aliasCTAGE-3
HGNC (Hugo) CTAGE3P
LocusID (NCBI) 220112
Atlas_Id 51888
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 51907821 and ends at 51910079 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CTAGE3P   24348
Cards
Entrez_Gene (NCBI)CTAGE3P  220112  CTAGE family member 3, pseudogene
AliasesCTAGE-3; CTAGE3
GeneCards (Weizmann)CTAGE3P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:51907821-51910079 [Contig_View]  CTAGE3P [Vega]
TCGA cBioPortalCTAGE3P
AceView (NCBI)CTAGE3P
Genatlas (Paris)CTAGE3P
WikiGenes220112
SOURCE (Princeton)CTAGE3P
Genetics Home Reference (NIH)CTAGE3P
Genomic and cartography
GoldenPath hg38 (UCSC)CTAGE3P  -     chr13:51907821-51910079 -  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTAGE3P  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblCTAGE3P - 13q14.3 [CytoView hg19]  CTAGE3P - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBICTAGE3P [Mapview hg19]  CTAGE3P [Mapview hg38]
OMIM608857   
Gene and transcription
Genbank (Entrez)AF338231
RefSeq transcript (Entrez)NM_172237
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTAGE3P
Cluster EST : UnigeneHs.623891 [ NCBI ]
CGAP (NCI)Hs.623891
Gene ExpressionCTAGE3P [ NCBI-GEO ]   CTAGE3P [ EBI - ARRAY_EXPRESS ]   CTAGE3P [ SEEK ]   CTAGE3P [ MEM ]
Gene Expression Viewer (FireBrowse)CTAGE3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220112
GTEX Portal (Tissue expression)CTAGE3P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IX95   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IX95  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IX95
Splice isoforms : SwissVarQ8IX95
PhosPhoSitePlusQ8IX95
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTAGE3P
DMDM Disease mutations220112
Blocks (Seattle)CTAGE3P
SuperfamilyQ8IX95
Peptide AtlasQ8IX95
IPIIPI00182347   
Protein Interaction databases
DIP (DOE-UCLA)Q8IX95
IntAct (EBI)Q8IX95
BioGRIDCTAGE3P
STRING (EMBL)CTAGE3P
ZODIACCTAGE3P
Ontologies - Pathways
QuickGOQ8IX95
Ontology : AmiGOcellular_component  biological_process  
Ontology : EGO-EBIcellular_component  biological_process  
NDEx NetworkCTAGE3P
Atlas of Cancer Signalling NetworkCTAGE3P
Wikipedia pathwaysCTAGE3P
Orthology - Evolution
OrthoDB220112
Phylogenetic Trees/Animal Genes : TreeFamCTAGE3P
HOVERGENQ8IX95
HOGENOMQ8IX95
Homologs : HomoloGeneCTAGE3P
Homology/Alignments : Family Browser (UCSC)CTAGE3P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTAGE3P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTAGE3P
dbVarCTAGE3P
ClinVarCTAGE3P
1000_GenomesCTAGE3P 
Exome Variant ServerCTAGE3P
ExAC (Exome Aggregation Consortium)CTAGE3P (select the gene name)
Genetic variants : HAPMAP220112
Genomic Variants (DGV)CTAGE3P [DGVbeta]
DECIPHERCTAGE3P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTAGE3P 
Mutations
ICGC Data PortalCTAGE3P 
TCGA Data PortalCTAGE3P 
Broad Tumor PortalCTAGE3P
OASIS PortalCTAGE3P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCTAGE3P
BioMutasearch CTAGE3P
DgiDB (Drug Gene Interaction Database)CTAGE3P
DoCM (Curated mutations)CTAGE3P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTAGE3P (select a term)
intoGenCTAGE3P
Cancer3DCTAGE3P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608857   
Orphanet
MedgenCTAGE3P
Genetic Testing Registry CTAGE3P
NextProtQ8IX95 [Medical]
TSGene220112
GENETestsCTAGE3P
Target ValidationCTAGE3P
Huge Navigator CTAGE3P [HugePedia]
snp3D : Map Gene to Disease220112
BioCentury BCIQCTAGE3P
ClinGenCTAGE3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220112
Chemical/Pharm GKB GenePA134918814
Clinical trialCTAGE3P
Miscellaneous
canSAR (ICR)CTAGE3P (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTAGE3P
EVEXCTAGE3P
GoPubMedCTAGE3P
iHOPCTAGE3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:04:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.