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CTAGE4 (CTAGE family member 4)

Identity

Alias (NCBI)cTAGE-4
HGNC (Hugo) CTAGE4
HGNC Alias symbFLJ43692
cTAGE-4
HGNC Alias namecutaneous T-cell lymphoma-associated antigen 4
HGNC Previous nameCTAGE family, member 4
LocusID (NCBI) 100128553
Atlas_Id 62154
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 144183455 and ends at 144186080 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CTAGE4   24772
Cards
Entrez_Gene (NCBI)CTAGE4    CTAGE family member 4
AliasescTAGE-4
GeneCards (Weizmann)CTAGE4
Ensembl hg19 (Hinxton)ENSG00000225932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225932 [Gene_View]  ENSG00000225932 [Sequence]  chr7:144183455-144186080 [Contig_View]  CTAGE4 [Vega]
ICGC DataPortalENSG00000225932
TCGA cBioPortalCTAGE4
AceView (NCBI)CTAGE4
Genatlas (Paris)CTAGE4
SOURCE (Princeton)CTAGE4
Genetics Home Reference (NIH)CTAGE4
Genomic and cartography
GoldenPath hg38 (UCSC)CTAGE4  -     chr7:144183455-144186080 +  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTAGE4  -     7q35   [Description]    (hg19-Feb_2009)
GoldenPathCTAGE4 - 7q35 [CytoView hg19]  CTAGE4 - 7q35 [CytoView hg38]
ImmunoBaseENSG00000225932
Genome Data Viewer NCBICTAGE4 [Mapview hg19]  
OMIM608910   
Gene and transcription
Genbank (Entrez)AF338232 BE272325 DB515636 DB727739 EL733901
RefSeq transcript (Entrez)NM_198495
Consensus coding sequences : CCDS (NCBI)CTAGE4
Gene ExpressionCTAGE4 [ NCBI-GEO ]   CTAGE4 [ EBI - ARRAY_EXPRESS ]   CTAGE4 [ SEEK ]   CTAGE4 [ MEM ]
Gene Expression Viewer (FireBrowse)CTAGE4 [ Firebrowse - Broad ]
GenevisibleExpression of CTAGE4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128553
GTEX Portal (Tissue expression)CTAGE4
Human Protein AtlasENSG00000225932-CTAGE4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IX94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IX94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IX94
PhosPhoSitePlusQ8IX94
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTAGE4
SuperfamilyQ8IX94
AlphaFold pdb e-kbQ8IX94   
Human Protein Atlas [tissue]ENSG00000225932-CTAGE4 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8IX94
IntAct (EBI)Q8IX94
BioGRIDCTAGE4
STRING (EMBL)CTAGE4
ZODIACCTAGE4
Ontologies - Pathways
QuickGOQ8IX94
Ontology : AmiGOcellular_component  endoplasmic reticulum membrane  endoplasmic reticulum to Golgi vesicle-mediated transport  biological_process  protein secretion  integral component of membrane  vesicle cargo loading  endoplasmic reticulum exit site  
Ontology : EGO-EBIcellular_component  endoplasmic reticulum membrane  endoplasmic reticulum to Golgi vesicle-mediated transport  biological_process  protein secretion  integral component of membrane  vesicle cargo loading  endoplasmic reticulum exit site  
NDEx NetworkCTAGE4
Atlas of Cancer Signalling NetworkCTAGE4
Wikipedia pathwaysCTAGE4
Orthology - Evolution
OrthoDB100128553
GeneTree (enSembl)ENSG00000225932
Phylogenetic Trees/Animal Genes : TreeFamCTAGE4
Homologs : HomoloGeneCTAGE4
Homology/Alignments : Family Browser (UCSC)CTAGE4
Gene fusions - Rearrangements
Fusion : QuiverCTAGE4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTAGE4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTAGE4
dbVarCTAGE4
ClinVarCTAGE4
MonarchCTAGE4
1000_GenomesCTAGE4 
Exome Variant ServerCTAGE4
GNOMAD BrowserENSG00000225932
Varsome BrowserCTAGE4
ACMGCTAGE4 variants
VarityQ8IX94
Genomic Variants (DGV)CTAGE4 [DGVbeta]
DECIPHERCTAGE4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTAGE4 
Mutations
ICGC Data PortalCTAGE4 
TCGA Data PortalCTAGE4 
Broad Tumor PortalCTAGE4
OASIS PortalCTAGE4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTAGE4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCTAGE4
Mutations and Diseases : HGMDCTAGE4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCTAGE4
DgiDB (Drug Gene Interaction Database)CTAGE4
DoCM (Curated mutations)CTAGE4
CIViC (Clinical Interpretations of Variants in Cancer)CTAGE4
Cancer3DCTAGE4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608910   
Orphanet
DisGeNETCTAGE4
MedgenCTAGE4
Genetic Testing Registry CTAGE4
NextProtQ8IX94 [Medical]
GENETestsCTAGE4
Target ValidationCTAGE4
Huge Navigator CTAGE4 [HugePedia]
ClinGenCTAGE4
Clinical trials, drugs, therapy
MyCancerGenomeCTAGE4
Protein Interactions : CTDCTAGE4
Pharm GKB GenePA134946406
PharosQ8IX94
Clinical trialCTAGE4
Miscellaneous
canSAR (ICR)CTAGE4
HarmonizomeCTAGE4
DataMed IndexCTAGE4
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCTAGE4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:47:01 CEST 2021

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