Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CTAGE4 (CTAGE family, member 4)

Identity

Alias_namesCTAGE family, member 4
Alias_symbol (synonym)FLJ43692
cTAGE-4
Other alias
HGNC (Hugo) CTAGE4
LocusID (NCBI) 100128553
Atlas_Id 62154
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 143880548 and ends at 143883173 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTAGE4   24772
Cards
Entrez_Gene (NCBI)CTAGE4  100128553  CTAGE family, member 4
AliasescTAGE-4
GeneCards (Weizmann)CTAGE4
Ensembl hg19 (Hinxton)ENSG00000225932 [Gene_View]  chr7:143880548-143883173 [Contig_View]  CTAGE4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000225932 [Gene_View]  chr7:143880548-143883173 [Contig_View]  CTAGE4 [Vega]
ICGC DataPortalENSG00000225932
TCGA cBioPortalCTAGE4
AceView (NCBI)CTAGE4
Genatlas (Paris)CTAGE4
WikiGenes100128553
SOURCE (Princeton)CTAGE4
Genetics Home Reference (NIH)CTAGE4
Genomic and cartography
GoldenPath hg19 (UCSC)CTAGE4  -     chr7:143880548-143883173 +  7q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTAGE4  -     7q35   [Description]    (hg38-Dec_2013)
EnsemblCTAGE4 - 7q35 [CytoView hg19]  CTAGE4 - 7q35 [CytoView hg38]
Mapping of homologs : NCBICTAGE4 [Mapview hg19]  CTAGE4 [Mapview hg38]
OMIM608910   
Gene and transcription
Genbank (Entrez)AF338232 BE272325 DB515636 DB727739 EL733901
RefSeq transcript (Entrez)NM_198495
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)CTAGE4
Cluster EST : UnigeneHs.720693 [ NCBI ]
CGAP (NCI)Hs.720693
Alternative Splicing GalleryENSG00000225932
Gene ExpressionCTAGE4 [ NCBI-GEO ]   CTAGE4 [ EBI - ARRAY_EXPRESS ]   CTAGE4 [ SEEK ]   CTAGE4 [ MEM ]
Gene Expression Viewer (FireBrowse)CTAGE4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128553
GTEX Portal (Tissue expression)CTAGE4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IX94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IX94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IX94
Splice isoforms : SwissVarQ8IX94
PhosPhoSitePlusQ8IX94
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTAGE4
DMDM Disease mutations100128553
Blocks (Seattle)CTAGE4
SuperfamilyQ8IX94
Human Protein AtlasENSG00000225932
Peptide AtlasQ8IX94
IPIIPI00923407   IPI01018008   
Protein Interaction databases
DIP (DOE-UCLA)Q8IX94
IntAct (EBI)Q8IX94
FunCoupENSG00000225932
BioGRIDCTAGE4
STRING (EMBL)CTAGE4
ZODIACCTAGE4
Ontologies - Pathways
QuickGOQ8IX94
Ontology : AmiGOcellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBIcellular_component  biological_process  integral component of membrane  
NDEx NetworkCTAGE4
Atlas of Cancer Signalling NetworkCTAGE4
Wikipedia pathwaysCTAGE4
Orthology - Evolution
OrthoDB100128553
GeneTree (enSembl)ENSG00000225932
Phylogenetic Trees/Animal Genes : TreeFamCTAGE4
HOVERGENQ8IX94
HOGENOMQ8IX94
Homologs : HomoloGeneCTAGE4
Homology/Alignments : Family Browser (UCSC)CTAGE4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTAGE4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTAGE4
dbVarCTAGE4
ClinVarCTAGE4
1000_GenomesCTAGE4 
Exome Variant ServerCTAGE4
ExAC (Exome Aggregation Consortium)CTAGE4 (select the gene name)
Genetic variants : HAPMAP100128553
Genomic Variants (DGV)CTAGE4 [DGVbeta]
DECIPHER (Syndromes)7:143880548-143883173  ENSG00000225932
CONAN: Copy Number AnalysisCTAGE4 
Mutations
ICGC Data PortalCTAGE4 
TCGA Data PortalCTAGE4 
Broad Tumor PortalCTAGE4
OASIS PortalCTAGE4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTAGE4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTAGE4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTAGE4
DgiDB (Drug Gene Interaction Database)CTAGE4
DoCM (Curated mutations)CTAGE4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTAGE4 (select a term)
intoGenCTAGE4
Cancer3DCTAGE4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608910   
Orphanet
MedgenCTAGE4
Genetic Testing Registry CTAGE4
NextProtQ8IX94 [Medical]
TSGene100128553
GENETestsCTAGE4
Huge Navigator CTAGE4 [HugePedia]
snp3D : Map Gene to Disease100128553
BioCentury BCIQCTAGE4
ClinGenCTAGE4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128553
Chemical/Pharm GKB GenePA134946406
Clinical trialCTAGE4
Miscellaneous
canSAR (ICR)CTAGE4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTAGE4
EVEXCTAGE4
GoPubMedCTAGE4
iHOPCTAGE4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:00:34 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.