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CTAGE6 (CTAGE family, member 6)

Identity

Alias_namesCTAGE6P
CTAGE family, member 6, pseudogene
CTAGE family, member 6
Alias_symbol (synonym)MGC41943
Other alias
HGNC (Hugo) CTAGE6
LocusID (NCBI) 340307
Atlas_Id 62155
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 143452182 and ends at 143454843 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTAGE6   28644
Cards
Entrez_Gene (NCBI)CTAGE6  340307  CTAGE family, member 6
AliasesCTAGE6P
GeneCards (Weizmann)CTAGE6
Ensembl hg19 (Hinxton)ENSG00000271321 [Gene_View]  chr7:143452182-143454843 [Contig_View]  CTAGE6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000271321 [Gene_View]  chr7:143452182-143454843 [Contig_View]  CTAGE6 [Vega]
ICGC DataPortalENSG00000271321
TCGA cBioPortalCTAGE6
AceView (NCBI)CTAGE6
Genatlas (Paris)CTAGE6
WikiGenes340307
SOURCE (Princeton)CTAGE6
Genetics Home Reference (NIH)CTAGE6
Genomic and cartography
GoldenPath hg19 (UCSC)CTAGE6  -     chr7:143452182-143454843 -  7q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTAGE6  -     7q35   [Description]    (hg38-Dec_2013)
EnsemblCTAGE6 - 7q35 [CytoView hg19]  CTAGE6 - 7q35 [CytoView hg38]
Mapping of homologs : NCBICTAGE6 [Mapview hg19]  CTAGE6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043153 BC101323 BC101324 BC110410
RefSeq transcript (Entrez)NM_178561
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)CTAGE6
Cluster EST : UnigeneHs.676333 [ NCBI ]
CGAP (NCI)Hs.676333
Alternative Splicing GalleryENSG00000271321
Gene ExpressionCTAGE6 [ NCBI-GEO ]   CTAGE6 [ EBI - ARRAY_EXPRESS ]   CTAGE6 [ SEEK ]   CTAGE6 [ MEM ]
Gene Expression Viewer (FireBrowse)CTAGE6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340307
GTEX Portal (Tissue expression)CTAGE6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UF2
Splice isoforms : SwissVarQ86UF2
PhosPhoSitePlusQ86UF2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTAGE6
DMDM Disease mutations340307
Blocks (Seattle)CTAGE6
SuperfamilyQ86UF2
Human Protein AtlasENSG00000271321
Peptide AtlasQ86UF2
IPIIPI00845515   IPI00984585   
Protein Interaction databases
DIP (DOE-UCLA)Q86UF2
IntAct (EBI)Q86UF2
FunCoupENSG00000271321
BioGRIDCTAGE6
STRING (EMBL)CTAGE6
ZODIACCTAGE6
Ontologies - Pathways
QuickGOQ86UF2
Ontology : AmiGOcellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBIcellular_component  biological_process  integral component of membrane  
NDEx NetworkCTAGE6
Atlas of Cancer Signalling NetworkCTAGE6
Wikipedia pathwaysCTAGE6
Orthology - Evolution
OrthoDB340307
GeneTree (enSembl)ENSG00000271321
Phylogenetic Trees/Animal Genes : TreeFamCTAGE6
HOVERGENQ86UF2
HOGENOMQ86UF2
Homologs : HomoloGeneCTAGE6
Homology/Alignments : Family Browser (UCSC)CTAGE6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTAGE6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTAGE6
dbVarCTAGE6
ClinVarCTAGE6
1000_GenomesCTAGE6 
Exome Variant ServerCTAGE6
ExAC (Exome Aggregation Consortium)CTAGE6 (select the gene name)
Genetic variants : HAPMAP340307
Genomic Variants (DGV)CTAGE6 [DGVbeta]
DECIPHER (Syndromes)7:143452182-143454843  ENSG00000271321
CONAN: Copy Number AnalysisCTAGE6 
Mutations
ICGC Data PortalCTAGE6 
TCGA Data PortalCTAGE6 
Broad Tumor PortalCTAGE6
OASIS PortalCTAGE6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCTAGE6
BioMutasearch CTAGE6
DgiDB (Drug Gene Interaction Database)CTAGE6
DoCM (Curated mutations)CTAGE6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTAGE6 (select a term)
intoGenCTAGE6
Cancer3DCTAGE6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCTAGE6
Genetic Testing Registry CTAGE6
NextProtQ86UF2 [Medical]
TSGene340307
GENETestsCTAGE6
Huge Navigator CTAGE6 [HugePedia]
snp3D : Map Gene to Disease340307
BioCentury BCIQCTAGE6
ClinGenCTAGE6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340307
Chemical/Pharm GKB GenePA165617921
Clinical trialCTAGE6
Miscellaneous
canSAR (ICR)CTAGE6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTAGE6
EVEXCTAGE6
GoPubMedCTAGE6
iHOPCTAGE6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:34 CET 2017

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