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CTAGE9 (CTAGE family member 9)

Identity

Alias_namesCTAGE family
Other alias-
HGNC (Hugo) CTAGE9
LocusID (NCBI) 643854
Atlas_Id 51591
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 131708441 and ends at 131711017 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTAGE9   37275
Cards
Entrez_Gene (NCBI)CTAGE9  643854  CTAGE family member 9
Aliases
GeneCards (Weizmann)CTAGE9
Ensembl hg19 (Hinxton)ENSG00000236761 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236761 [Gene_View]  ENSG00000236761 [Sequence]  chr6:131708441-131711017 [Contig_View]  CTAGE9 [Vega]
ICGC DataPortalENSG00000236761
TCGA cBioPortalCTAGE9
AceView (NCBI)CTAGE9
Genatlas (Paris)CTAGE9
WikiGenes643854
SOURCE (Princeton)CTAGE9
Genetics Home Reference (NIH)CTAGE9
Genomic and cartography
GoldenPath hg38 (UCSC)CTAGE9  -     chr6:131708441-131711017 -  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTAGE9  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblCTAGE9 - 6q23.2 [CytoView hg19]  CTAGE9 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBICTAGE9 [Mapview hg19]  CTAGE9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC101322 CN272092 DB518866
RefSeq transcript (Entrez)NM_001145659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTAGE9
Cluster EST : UnigeneHs.632613 [ NCBI ]
CGAP (NCI)Hs.632613
Alternative Splicing GalleryENSG00000236761
Gene ExpressionCTAGE9 [ NCBI-GEO ]   CTAGE9 [ EBI - ARRAY_EXPRESS ]   CTAGE9 [ SEEK ]   CTAGE9 [ MEM ]
Gene Expression Viewer (FireBrowse)CTAGE9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643854
GTEX Portal (Tissue expression)CTAGE9
Human Protein AtlasENSG00000236761-CTAGE9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4FU28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4FU28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4FU28
Splice isoforms : SwissVarA4FU28
PhosPhoSitePlusA4FU28
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTAGE9
DMDM Disease mutations643854
Blocks (Seattle)CTAGE9
SuperfamilyA4FU28
Human Protein Atlas [tissue]ENSG00000236761-CTAGE9 [tissue]
Peptide AtlasA4FU28
IPIIPI00740858   
Protein Interaction databases
DIP (DOE-UCLA)A4FU28
IntAct (EBI)A4FU28
FunCoupENSG00000236761
BioGRIDCTAGE9
STRING (EMBL)CTAGE9
ZODIACCTAGE9
Ontologies - Pathways
QuickGOA4FU28
Ontology : AmiGOendoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  protein secretion  integral component of membrane  cargo loading into vesicle  lipoprotein transport  lipoprotein transporter activity  endoplasmic reticulum exit site  
Ontology : EGO-EBIendoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  protein secretion  integral component of membrane  cargo loading into vesicle  lipoprotein transport  lipoprotein transporter activity  endoplasmic reticulum exit site  
NDEx NetworkCTAGE9
Atlas of Cancer Signalling NetworkCTAGE9
Wikipedia pathwaysCTAGE9
Orthology - Evolution
OrthoDB643854
GeneTree (enSembl)ENSG00000236761
Phylogenetic Trees/Animal Genes : TreeFamCTAGE9
HOVERGENA4FU28
HOGENOMA4FU28
Homologs : HomoloGeneCTAGE9
Homology/Alignments : Family Browser (UCSC)CTAGE9
Gene fusions - Rearrangements
Fusion : QuiverCTAGE9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTAGE9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTAGE9
dbVarCTAGE9
ClinVarCTAGE9
1000_GenomesCTAGE9 
Exome Variant ServerCTAGE9
ExAC (Exome Aggregation Consortium)ENSG00000236761
GNOMAD BrowserENSG00000236761
Varsome BrowserCTAGE9
Genetic variants : HAPMAP643854
Genomic Variants (DGV)CTAGE9 [DGVbeta]
DECIPHERCTAGE9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTAGE9 
Mutations
ICGC Data PortalCTAGE9 
TCGA Data PortalCTAGE9 
Broad Tumor PortalCTAGE9
OASIS PortalCTAGE9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTAGE9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTAGE9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTAGE9
DgiDB (Drug Gene Interaction Database)CTAGE9
DoCM (Curated mutations)CTAGE9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTAGE9 (select a term)
intoGenCTAGE9
Cancer3DCTAGE9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCTAGE9
MedgenCTAGE9
Genetic Testing Registry CTAGE9
NextProtA4FU28 [Medical]
TSGene643854
GENETestsCTAGE9
Target ValidationCTAGE9
Huge Navigator CTAGE9 [HugePedia]
snp3D : Map Gene to Disease643854
BioCentury BCIQCTAGE9
ClinGenCTAGE9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643854
Chemical/Pharm GKB GenePA165617886
Clinical trialCTAGE9
Miscellaneous
canSAR (ICR)CTAGE9 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTAGE9
EVEXCTAGE9
GoPubMedCTAGE9
iHOPCTAGE9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:00:45 CET 2018

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