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CTBS (chitobiase)

Identity

Alias (NCBI)CTB
HGNC (Hugo) CTBS
HGNC Previous nameCTB
HGNC Previous namechitobiase, di-N-acetyl-
LocusID (NCBI) 1486
Atlas_Id 62164
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 84549611 and ends at 84574440 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTBS (1p22.3)::GNG5 (1p22.3)GNG5 (1p22.3)::CTBS (1p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(1;1)(p22;p22) CTBS::GNG5
t(1;1)(p22;p22) CTBS::GNG5


External links

 

Nomenclature
HGNC (Hugo)CTBS   2496
Cards
Entrez_Gene (NCBI)CTBS    chitobiase
AliasesCTB
GeneCards (Weizmann)CTBS
Ensembl hg19 (Hinxton)ENSG00000117151 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117151 [Gene_View]  ENSG00000117151 [Sequence]  chr1:84549611-84574440 [Contig_View]  CTBS [Vega]
ICGC DataPortalENSG00000117151
TCGA cBioPortalCTBS
AceView (NCBI)CTBS
Genatlas (Paris)CTBS
SOURCE (Princeton)CTBS
Genetics Home Reference (NIH)CTBS
Genomic and cartography
GoldenPath hg38 (UCSC)CTBS  -     chr1:84549611-84574440 -  1p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTBS  -     1p22.3   [Description]    (hg19-Feb_2009)
GoldenPathCTBS - 1p22.3 [CytoView hg19]  CTBS - 1p22.3 [CytoView hg38]
ImmunoBaseENSG00000117151
Genome Data Viewer NCBICTBS [Mapview hg19]  
OMIM600873   
Gene and transcription
Genbank (Entrez)AI339601 AK075423 AK298703 AK314640 BC024007
RefSeq transcript (Entrez)NM_004388
Consensus coding sequences : CCDS (NCBI)CTBS
Gene ExpressionCTBS [ NCBI-GEO ]   CTBS [ EBI - ARRAY_EXPRESS ]   CTBS [ SEEK ]   CTBS [ MEM ]
Gene Expression Viewer (FireBrowse)CTBS [ Firebrowse - Broad ]
GenevisibleExpression of CTBS in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1486
GTEX Portal (Tissue expression)CTBS
Human Protein AtlasENSG00000117151-CTBS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01459   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ01459  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ01459
Catalytic activity : Enzyme3.2.1.- [ Enzyme-Expasy ]   3.2.1.-3.2.1.- [ IntEnz-EBI ]   3.2.1.- [ BRENDA ]   3.2.1.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ01459
Domaine pattern : Prosite (Expaxy)GH18_1 (PS01095)    GH18_2 (PS51910)   
Domains : Interpro (EBI)Chitinase_II    Chitinase_insertion_sf    Glyco_hydro18_cat    Glyco_hydro_18_chit_AS    Glycoside_hydrolase_SF   
Domain families : Pfam (Sanger)Glyco_hydro_18 (PF00704)   
Domain families : Pfam (NCBI)pfam00704   
Domain families : Smart (EMBL)Glyco_18 (SM00636)  
Conserved Domain (NCBI)CTBS
SuperfamilyQ01459
AlphaFold pdb e-kbQ01459   
Human Protein Atlas [tissue]ENSG00000117151-CTBS [tissue]
HPRD02927
Protein Interaction databases
DIP (DOE-UCLA)Q01459
IntAct (EBI)Q01459
BioGRIDCTBS
STRING (EMBL)CTBS
ZODIACCTBS
Ontologies - Pathways
QuickGOQ01459
Ontology : AmiGOchitinase activity  extracellular space  lysosome  chitin catabolic process  chitin binding  oligosaccharide catabolic process  
Ontology : EGO-EBIchitinase activity  extracellular space  lysosome  chitin catabolic process  chitin binding  oligosaccharide catabolic process  
Pathways : KEGGKEGG_hsa00530 Aminosugars metabolism    KEGG_hsa00520 Nucleotide sugars metabolism   
NDEx NetworkCTBS
Atlas of Cancer Signalling NetworkCTBS
Wikipedia pathwaysCTBS
Orthology - Evolution
OrthoDB1486
GeneTree (enSembl)ENSG00000117151
Phylogenetic Trees/Animal Genes : TreeFamCTBS
Homologs : HomoloGeneCTBS
Homology/Alignments : Family Browser (UCSC)CTBS
Gene fusions - Rearrangements
Fusion : QuiverCTBS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTBS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTBS
dbVarCTBS
ClinVarCTBS
MonarchCTBS
1000_GenomesCTBS 
Exome Variant ServerCTBS
GNOMAD BrowserENSG00000117151
Varsome BrowserCTBS
ACMGCTBS variants
VarityQ01459
Genomic Variants (DGV)CTBS [DGVbeta]
DECIPHERCTBS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTBS 
Mutations
ICGC Data PortalCTBS 
TCGA Data PortalCTBS 
Broad Tumor PortalCTBS
OASIS PortalCTBS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTBS  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCTBS
Mutations and Diseases : HGMDCTBS
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCTBS
DgiDB (Drug Gene Interaction Database)CTBS
DoCM (Curated mutations)CTBS
CIViC (Clinical Interpretations of Variants in Cancer)CTBS
Cancer3DCTBS
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600873   
Orphanet
DisGeNETCTBS
MedgenCTBS
Genetic Testing Registry CTBS
NextProtQ01459 [Medical]
GENETestsCTBS
Target ValidationCTBS
Huge Navigator CTBS [HugePedia]
ClinGenCTBS
Clinical trials, drugs, therapy
MyCancerGenomeCTBS
Protein Interactions : CTDCTBS
Pharm GKB GenePA26997
PharosQ01459
Clinical trialCTBS
Miscellaneous
canSAR (ICR)CTBS
HarmonizomeCTBS
ARCHS4CTBS
DataMed IndexCTBS
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCTBS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jan 20 13:15:48 CET 2022

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