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CTBS (chitobiase)

Identity

Alias_namesCTB
chitobiase, di-N-acetyl-
Other alias
HGNC (Hugo) CTBS
LocusID (NCBI) 1486
Atlas_Id 62164
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 84553121 and ends at 84574480 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CTBS (1p22.3) / GNG5 (1p22.3)GNG5 (1p22.3) / CTBS (1p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTBS   2496
Cards
Entrez_Gene (NCBI)CTBS  1486  chitobiase
AliasesCTB
GeneCards (Weizmann)CTBS
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:84553121-84574480 [Contig_View]  CTBS [Vega]
TCGA cBioPortalCTBS
AceView (NCBI)CTBS
Genatlas (Paris)CTBS
WikiGenes1486
SOURCE (Princeton)CTBS
Genetics Home Reference (NIH)CTBS
Genomic and cartography
GoldenPath hg38 (UCSC)CTBS  -     chr1:84553121-84574480 -  1p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTBS  -     1p22.3   [Description]    (hg19-Feb_2009)
EnsemblCTBS - 1p22.3 [CytoView hg19]  CTBS - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBICTBS [Mapview hg19]  CTBS [Mapview hg38]
OMIM600873   
Gene and transcription
Genbank (Entrez)AI339601 AK075423 AK298703 AK314640 BC024007
RefSeq transcript (Entrez)NM_004388
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTBS
Cluster EST : UnigeneHs.513557 [ NCBI ]
CGAP (NCI)Hs.513557
Gene ExpressionCTBS [ NCBI-GEO ]   CTBS [ EBI - ARRAY_EXPRESS ]   CTBS [ SEEK ]   CTBS [ MEM ]
Gene Expression Viewer (FireBrowse)CTBS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1486
GTEX Portal (Tissue expression)CTBS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01459   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ01459  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ01459
Splice isoforms : SwissVarQ01459
Catalytic activity : Enzyme3.2.1.- [ Enzyme-Expasy ]   3.2.1.-3.2.1.- [ IntEnz-EBI ]   3.2.1.- [ BRENDA ]   3.2.1.- [ KEGG ]   
PhosPhoSitePlusQ01459
Domaine pattern : Prosite (Expaxy)CHITINASE_18 (PS01095)   
Domains : Interpro (EBI)Chitinase_II    Glyco_hydro18_cat    Glyco_hydro_18_chit_AS    Glyco_hydro_catalytic_dom    Glycoside_hydrolase_SF   
Domain families : Pfam (Sanger)Glyco_hydro_18 (PF00704)   
Domain families : Pfam (NCBI)pfam00704   
Domain families : Smart (EMBL)Glyco_18 (SM00636)  
Conserved Domain (NCBI)CTBS
DMDM Disease mutations1486
Blocks (Seattle)CTBS
SuperfamilyQ01459
Peptide AtlasQ01459
HPRD02927
IPIIPI00007778   IPI00643023   
Protein Interaction databases
DIP (DOE-UCLA)Q01459
IntAct (EBI)Q01459
BioGRIDCTBS
STRING (EMBL)CTBS
ZODIACCTBS
Ontologies - Pathways
QuickGOQ01459
Ontology : AmiGOchitinase activity  extracellular space  lysosome  chitin catabolic process  chitin binding  oligosaccharide catabolic process  extracellular exosome  
Ontology : EGO-EBIchitinase activity  extracellular space  lysosome  chitin catabolic process  chitin binding  oligosaccharide catabolic process  extracellular exosome  
NDEx NetworkCTBS
Atlas of Cancer Signalling NetworkCTBS
Wikipedia pathwaysCTBS
Orthology - Evolution
OrthoDB1486
Phylogenetic Trees/Animal Genes : TreeFamCTBS
HOVERGENQ01459
HOGENOMQ01459
Homologs : HomoloGeneCTBS
Homology/Alignments : Family Browser (UCSC)CTBS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTBS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTBS
dbVarCTBS
ClinVarCTBS
1000_GenomesCTBS 
Exome Variant ServerCTBS
ExAC (Exome Aggregation Consortium)CTBS (select the gene name)
Genetic variants : HAPMAP1486
Genomic Variants (DGV)CTBS [DGVbeta]
DECIPHERCTBS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTBS 
Mutations
ICGC Data PortalCTBS 
TCGA Data PortalCTBS 
Broad Tumor PortalCTBS
OASIS PortalCTBS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTBS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTBS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTBS
DgiDB (Drug Gene Interaction Database)CTBS
DoCM (Curated mutations)CTBS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTBS (select a term)
intoGenCTBS
Cancer3DCTBS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600873   
Orphanet
MedgenCTBS
Genetic Testing Registry CTBS
NextProtQ01459 [Medical]
TSGene1486
GENETestsCTBS
Huge Navigator CTBS [HugePedia]
snp3D : Map Gene to Disease1486
BioCentury BCIQCTBS
ClinGenCTBS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1486
Chemical/Pharm GKB GenePA26997
Clinical trialCTBS
Miscellaneous
canSAR (ICR)CTBS (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTBS
EVEXCTBS
GoPubMedCTBS
iHOPCTBS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:07:14 CEST 2017

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