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CTCFL (CCCTC-binding factor like)

Identity

Alias (NCBI)BORIS
CT27
CTCF-T
HMGB1L1
dJ579F20.2
HGNC (Hugo) CTCFL
HGNC Alias symbdJ579F20.2
BORIS
CT27
HGNC Alias namecancer/testis antigen 27
 transcriptional repressor CTCFL
HGNC Previous nameCCCTC-binding factor (zinc finger protein)-like
LocusID (NCBI) 140690
Atlas_Id 43711
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 57497168 and ends at 57525652 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CTCFL   16234
Cards
Entrez_Gene (NCBI)CTCFL    CCCTC-binding factor like
AliasesBORIS; CT27; CTCF-T; HMGB1L1; 
dJ579F20.2
GeneCards (Weizmann)CTCFL
Ensembl hg19 (Hinxton)ENSG00000124092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124092 [Gene_View]  ENSG00000124092 [Sequence]  chr20:57497168-57525652 [Contig_View]  CTCFL [Vega]
ICGC DataPortalENSG00000124092
TCGA cBioPortalCTCFL
AceView (NCBI)CTCFL
Genatlas (Paris)CTCFL
SOURCE (Princeton)CTCFL
Genetics Home Reference (NIH)CTCFL
Genomic and cartography
GoldenPath hg38 (UCSC)CTCFL  -     chr20:57497168-57525652 -  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTCFL  -     20q13.31   [Description]    (hg19-Feb_2009)
GoldenPathCTCFL - 20q13.31 [CytoView hg19]  CTCFL - 20q13.31 [CytoView hg38]
ImmunoBaseENSG00000124092
Genome Data Viewer NCBICTCFL [Mapview hg19]  
OMIM607022   
Gene and transcription
Genbank (Entrez)AF336042 AK128070 AK313990 AW243377 AY071919
RefSeq transcript (Entrez)NM_001269040 NM_001269041 NM_001269042 NM_001269043 NM_001269044 NM_001269045 NM_001269046 NM_001269047 NM_001269048 NM_001269049 NM_001269050 NM_001269051 NM_001269052 NM_001269054 NM_001269055 NM_001386993 NM_001386994 NM_001386995 NM_001386996 NM_001386997 NM_080618
Consensus coding sequences : CCDS (NCBI)CTCFL
Gene ExpressionCTCFL [ NCBI-GEO ]   CTCFL [ EBI - ARRAY_EXPRESS ]   CTCFL [ SEEK ]   CTCFL [ MEM ]
Gene Expression Viewer (FireBrowse)CTCFL [ Firebrowse - Broad ]
GenevisibleExpression of CTCFL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140690
GTEX Portal (Tissue expression)CTCFL
Human Protein AtlasENSG00000124092-CTCFL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTCFL
Human Protein Atlas [tissue]ENSG00000124092-CTCFL [tissue]
HPRD09512
Protein Interaction databases
BioGRIDCTCFL
STRING (EMBL)CTCFL
ZODIACCTCFL
Ontologies - Pathways
Litterature
PubMed79 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCTCFL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:05:35 CEST 2021

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