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CTCFL (CCCTC-binding factor like)

Identity

Alias_namesCCCTC-binding factor (zinc finger protein)-like
Alias_symbol (synonym)dJ579F20.2
BORIS
CT27
Other aliasCTCF-T
HMGB1L1
HGNC (Hugo) CTCFL
LocusID (NCBI) 140690
Atlas_Id 43711
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 57497168 and ends at 57525652 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTCFL   16234
Cards
Entrez_Gene (NCBI)CTCFL  140690  CCCTC-binding factor like
AliasesBORIS; CT27; CTCF-T; HMGB1L1; 
dJ579F20.2
GeneCards (Weizmann)CTCFL
Ensembl hg19 (Hinxton)ENSG00000124092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124092 [Gene_View]  chr20:57497168-57525652 [Contig_View]  CTCFL [Vega]
ICGC DataPortalENSG00000124092
TCGA cBioPortalCTCFL
AceView (NCBI)CTCFL
Genatlas (Paris)CTCFL
WikiGenes140690
SOURCE (Princeton)CTCFL
Genetics Home Reference (NIH)CTCFL
Genomic and cartography
GoldenPath hg38 (UCSC)CTCFL  -     chr20:57497168-57525652 -  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTCFL  -     20q13.31   [Description]    (hg19-Feb_2009)
EnsemblCTCFL - 20q13.31 [CytoView hg19]  CTCFL - 20q13.31 [CytoView hg38]
Mapping of homologs : NCBICTCFL [Mapview hg19]  CTCFL [Mapview hg38]
OMIM607022   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001269040 NM_001269041 NM_001269042 NM_001269043 NM_001269044 NM_001269045 NM_001269046 NM_001269047 NM_001269048 NM_001269049 NM_001269050 NM_001269051 NM_001269052 NM_001269054 NM_001269055 NM_080618
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTCFL
Cluster EST : UnigeneHs.131543 [ NCBI ]
CGAP (NCI)Hs.131543
Alternative Splicing GalleryENSG00000124092
Gene ExpressionCTCFL [ NCBI-GEO ]   CTCFL [ EBI - ARRAY_EXPRESS ]   CTCFL [ SEEK ]   CTCFL [ MEM ]
Gene Expression Viewer (FireBrowse)CTCFL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140690
GTEX Portal (Tissue expression)CTCFL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI51
Splice isoforms : SwissVarQ8NI51
PhosPhoSitePlusQ8NI51
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)CTCFL
DMDM Disease mutations140690
Blocks (Seattle)CTCFL
SuperfamilyQ8NI51
Human Protein AtlasENSG00000124092
Peptide AtlasQ8NI51
HPRD09512
IPIIPI00942274   IPI00798332   IPI00304086   IPI00855974   IPI00855743   IPI00855708   IPI00855932   IPI00855769   IPI01015550   IPI01012301   IPI01011868   IPI00855961   IPI01013792   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI51
IntAct (EBI)Q8NI51
FunCoupENSG00000124092
BioGRIDCTCFL
STRING (EMBL)CTCFL
ZODIACCTCFL
Ontologies - Pathways
QuickGOQ8NI51
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  protein binding  nucleus  cytoplasm  regulation of gene expression by genetic imprinting  transcription from RNA polymerase II promoter  cell cycle  positive regulation of gene expression  histone methylation  histone binding  DNA methylation involved in gamete generation  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  regulation of histone H3-K4 methylation  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  protein binding  nucleus  cytoplasm  regulation of gene expression by genetic imprinting  transcription from RNA polymerase II promoter  cell cycle  positive regulation of gene expression  histone methylation  histone binding  DNA methylation involved in gamete generation  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  regulation of histone H3-K4 methylation  
NDEx NetworkCTCFL
Atlas of Cancer Signalling NetworkCTCFL
Wikipedia pathwaysCTCFL
Orthology - Evolution
OrthoDB140690
GeneTree (enSembl)ENSG00000124092
Phylogenetic Trees/Animal Genes : TreeFamCTCFL
HOVERGENQ8NI51
HOGENOMQ8NI51
Homologs : HomoloGeneCTCFL
Homology/Alignments : Family Browser (UCSC)CTCFL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTCFL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTCFL
dbVarCTCFL
ClinVarCTCFL
1000_GenomesCTCFL 
Exome Variant ServerCTCFL
ExAC (Exome Aggregation Consortium)CTCFL (select the gene name)
Genetic variants : HAPMAP140690
Genomic Variants (DGV)CTCFL [DGVbeta]
DECIPHERCTCFL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTCFL 
Mutations
ICGC Data PortalCTCFL 
TCGA Data PortalCTCFL 
Broad Tumor PortalCTCFL
OASIS PortalCTCFL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTCFL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTCFL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTCFL
DgiDB (Drug Gene Interaction Database)CTCFL
DoCM (Curated mutations)CTCFL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTCFL (select a term)
intoGenCTCFL
Cancer3DCTCFL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607022   
Orphanet
MedgenCTCFL
Genetic Testing Registry CTCFL
NextProtQ8NI51 [Medical]
TSGene140690
GENETestsCTCFL
Target ValidationCTCFL
Huge Navigator CTCFL [HugePedia]
snp3D : Map Gene to Disease140690
BioCentury BCIQCTCFL
ClinGenCTCFL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140690
Chemical/Pharm GKB GenePA26999
Clinical trialCTCFL
Miscellaneous
canSAR (ICR)CTCFL (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTCFL
EVEXCTCFL
GoPubMedCTCFL
iHOPCTCFL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 25 19:04:11 CEST 2017

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