Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CTD-2201I18.1 (uncharacterized LOC101929215)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 101929215
Atlas_Id 62173
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 80066350 and ends at 80083665 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)CTD-2201I18.1  101929215  uncharacterized LOC101929215
Aliases
GeneCards (Weizmann)CTD-2201I18.1
Ensembl hg19 (Hinxton)ENSG00000249825 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249825 [Gene_View]  chr5:80066350-80083665 [Contig_View]  CTD-2201I18.1 [Vega]
ICGC DataPortalENSG00000249825
TCGA cBioPortalCTD-2201I18.1
AceView (NCBI)CTD-2201I18.1
Genatlas (Paris)CTD-2201I18.1
WikiGenes101929215
SOURCE (Princeton)CTD-2201I18.1
Genetics Home Reference (NIH)CTD-2201I18.1
Genomic and cartography
GoldenPath hg38 (UCSC)CTD-2201I18.1  -     chr5:80066350-80083665 -  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTD-2201I18.1  -     5q14.1   [Description]    (hg19-Feb_2009)
EnsemblCTD-2201I18.1 - 5q14.1 [CytoView hg19]  CTD-2201I18.1 - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBICTD-2201I18.1 [Mapview hg19]  CTD-2201I18.1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC047373
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTD-2201I18.1
Alternative Splicing GalleryENSG00000249825
Gene ExpressionCTD-2201I18.1 [ NCBI-GEO ]   CTD-2201I18.1 [ EBI - ARRAY_EXPRESS ]   CTD-2201I18.1 [ SEEK ]   CTD-2201I18.1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTD-2201I18.1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929215
GTEX Portal (Tissue expression)CTD-2201I18.1
Human Protein AtlasENSG00000249825-CTD-2201I18.1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTD-2201I18.1
DMDM Disease mutations101929215
Blocks (Seattle)CTD-2201I18.1
Human Protein Atlas [tissue]ENSG00000249825-CTD-2201I18.1 [tissue]
Protein Interaction databases
FunCoupENSG00000249825
BioGRIDCTD-2201I18.1
STRING (EMBL)CTD-2201I18.1
ZODIACCTD-2201I18.1
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease101929215
BioCentury BCIQCTD-2201I18.1
ClinGenCTD-2201I18.1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929215
Clinical trialCTD-2201I18.1
Miscellaneous
canSAR (ICR)CTD-2201I18.1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTD-2201I18.1
EVEXCTD-2201I18.1
GoPubMedCTD-2201I18.1
iHOPCTD-2201I18.1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:45:05 CET 2017

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