Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CTDNEP1 (CTD nuclear envelope phosphatase 1)

Identity

Alias_namesDULLARD
dullard homolog (Xenopus laevis)
Alias_symbol (synonym)HSA011916
NET56
Other alias
HGNC (Hugo) CTDNEP1
LocusID (NCBI) 23399
Atlas_Id 62178
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7146906 and ends at 7154995 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BRWD1 (21q22.2) / CTDNEP1 (17p13.1)CTDNEP1 (17p13.1) / CENPP (9q22.31)MPDU1 (17p13.1) / CTDNEP1 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTDNEP1   19085
Cards
Entrez_Gene (NCBI)CTDNEP1  23399  CTD nuclear envelope phosphatase 1
AliasesDULLARD; HSA011916; NET56
GeneCards (Weizmann)CTDNEP1
Ensembl hg19 (Hinxton)ENSG00000175826 [Gene_View]  chr17:7146906-7154995 [Contig_View]  CTDNEP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175826 [Gene_View]  chr17:7146906-7154995 [Contig_View]  CTDNEP1 [Vega]
ICGC DataPortalENSG00000175826
TCGA cBioPortalCTDNEP1
AceView (NCBI)CTDNEP1
Genatlas (Paris)CTDNEP1
WikiGenes23399
SOURCE (Princeton)CTDNEP1
Genetics Home Reference (NIH)CTDNEP1
Genomic and cartography
GoldenPath hg19 (UCSC)CTDNEP1  -     chr17:7146906-7154995 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTDNEP1  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblCTDNEP1 - 17p13.1 [CytoView hg19]  CTDNEP1 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBICTDNEP1 [Mapview hg19]  CTDNEP1 [Mapview hg38]
OMIM610684   
Gene and transcription
Genbank (Entrez)AJ011916 AY364239 BC009295 DQ893130 DQ896409
RefSeq transcript (Entrez)NM_001143775 NM_015343
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)CTDNEP1
Cluster EST : UnigeneHs.513913 [ NCBI ]
CGAP (NCI)Hs.513913
Alternative Splicing GalleryENSG00000175826
Gene ExpressionCTDNEP1 [ NCBI-GEO ]   CTDNEP1 [ EBI - ARRAY_EXPRESS ]   CTDNEP1 [ SEEK ]   CTDNEP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTDNEP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23399
GTEX Portal (Tissue expression)CTDNEP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95476   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95476  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95476
Splice isoforms : SwissVarO95476
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   
PhosPhoSitePlusO95476
Domaine pattern : Prosite (Expaxy)FCP1 (PS50969)   
Domains : Interpro (EBI)Dullard_phosphatase    HAD-like_dom    NIF   
Domain families : Pfam (Sanger)NIF (PF03031)   
Domain families : Pfam (NCBI)pfam03031   
Domain families : Smart (EMBL)CPDc (SM00577)  
Conserved Domain (NCBI)CTDNEP1
DMDM Disease mutations23399
Blocks (Seattle)CTDNEP1
SuperfamilyO95476
Human Protein AtlasENSG00000175826
Peptide AtlasO95476
HPRD16845
IPIIPI00383704   
Protein Interaction databases
DIP (DOE-UCLA)O95476
IntAct (EBI)O95476
FunCoupENSG00000175826
BioGRIDCTDNEP1
STRING (EMBL)CTDNEP1
ZODIACCTDNEP1
Ontologies - Pathways
QuickGOO95476
Ontology : AmiGOmitotic cell cycle  protein serine/threonine phosphatase activity  protein serine/threonine phosphatase activity  protein binding  nuclear envelope  nuclear envelope  cytoplasm  endoplasmic reticulum membrane  protein dephosphorylation  nuclear envelope organization  mitotic nuclear envelope disassembly  gamete generation  mesoderm development  positive regulation of triglyceride biosynthetic process  integral component of membrane  nuclear membrane  protein localization to nucleus  Nem1-Spo7 phosphatase complex  positive regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBImitotic cell cycle  protein serine/threonine phosphatase activity  protein serine/threonine phosphatase activity  protein binding  nuclear envelope  nuclear envelope  cytoplasm  endoplasmic reticulum membrane  protein dephosphorylation  nuclear envelope organization  mitotic nuclear envelope disassembly  gamete generation  mesoderm development  positive regulation of triglyceride biosynthetic process  integral component of membrane  nuclear membrane  protein localization to nucleus  Nem1-Spo7 phosphatase complex  positive regulation of canonical Wnt signaling pathway  
NDEx NetworkCTDNEP1
Atlas of Cancer Signalling NetworkCTDNEP1
Wikipedia pathwaysCTDNEP1
Orthology - Evolution
OrthoDB23399
GeneTree (enSembl)ENSG00000175826
Phylogenetic Trees/Animal Genes : TreeFamCTDNEP1
HOVERGENO95476
HOGENOMO95476
Homologs : HomoloGeneCTDNEP1
Homology/Alignments : Family Browser (UCSC)CTDNEP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTDNEP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTDNEP1
dbVarCTDNEP1
ClinVarCTDNEP1
1000_GenomesCTDNEP1 
Exome Variant ServerCTDNEP1
ExAC (Exome Aggregation Consortium)CTDNEP1 (select the gene name)
Genetic variants : HAPMAP23399
Genomic Variants (DGV)CTDNEP1 [DGVbeta]
DECIPHER (Syndromes)17:7146906-7154995  ENSG00000175826
CONAN: Copy Number AnalysisCTDNEP1 
Mutations
ICGC Data PortalCTDNEP1 
TCGA Data PortalCTDNEP1 
Broad Tumor PortalCTDNEP1
OASIS PortalCTDNEP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTDNEP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTDNEP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTDNEP1
DgiDB (Drug Gene Interaction Database)CTDNEP1
DoCM (Curated mutations)CTDNEP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTDNEP1 (select a term)
intoGenCTDNEP1
Cancer3DCTDNEP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610684   
Orphanet
MedgenCTDNEP1
Genetic Testing Registry CTDNEP1
NextProtO95476 [Medical]
TSGene23399
GENETestsCTDNEP1
Huge Navigator CTDNEP1 [HugePedia]
snp3D : Map Gene to Disease23399
BioCentury BCIQCTDNEP1
ClinGenCTDNEP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23399
Chemical/Pharm GKB GenePA134937999
Clinical trialCTDNEP1
Miscellaneous
canSAR (ICR)CTDNEP1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTDNEP1
EVEXCTDNEP1
GoPubMedCTDNEP1
iHOPCTDNEP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:00:38 CET 2017

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