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CTDP1 (CTD phosphatase subunit 1)

Identity

Alias_namesCTD (carboxy-terminal domain
Alias_symbol (synonym)FCP1
Other aliasCCFDN
HGNC (Hugo) CTDP1
LocusID (NCBI) 9150
Atlas_Id 55851
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 79681430 and ends at 79754510 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CTDP1 (18q23) / NFATC1 (18q23)CTDP1 (18q23) / PQLC1 (18q23)CTDP1 (18q23) / TGFB1 (19q13.2)
ORC3 (6q15) / CTDP1 (18q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTDP1   2498
LRG (Locus Reference Genomic)LRG_236
Cards
Entrez_Gene (NCBI)CTDP1  9150  CTD phosphatase subunit 1
AliasesCCFDN; FCP1
GeneCards (Weizmann)CTDP1
Ensembl hg19 (Hinxton)ENSG00000060069 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000060069 [Gene_View]  chr18:79681430-79754510 [Contig_View]  CTDP1 [Vega]
ICGC DataPortalENSG00000060069
TCGA cBioPortalCTDP1
AceView (NCBI)CTDP1
Genatlas (Paris)CTDP1
WikiGenes9150
SOURCE (Princeton)CTDP1
Genetics Home Reference (NIH)CTDP1
Genomic and cartography
GoldenPath hg38 (UCSC)CTDP1  -     chr18:79681430-79754510 +  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTDP1  -     18q23   [Description]    (hg19-Feb_2009)
EnsemblCTDP1 - 18q23 [CytoView hg19]  CTDP1 - 18q23 [CytoView hg38]
Mapping of homologs : NCBICTDP1 [Mapview hg19]  CTDP1 [Mapview hg38]
OMIM604168   604927   
Gene and transcription
Genbank (Entrez)AA282312 AF081287 AF154115 AK123180 BC015010
RefSeq transcript (Entrez)NM_001202504 NM_001318511 NM_004715 NM_048368
RefSeq genomic (Entrez)NC_000018 NC_018929 NG_007988 NT_187617
Consensus coding sequences : CCDS (NCBI)CTDP1
Cluster EST : UnigeneHs.734021 [ NCBI ]
CGAP (NCI)Hs.734021
Alternative Splicing GalleryENSG00000060069
Gene ExpressionCTDP1 [ NCBI-GEO ]   CTDP1 [ EBI - ARRAY_EXPRESS ]   CTDP1 [ SEEK ]   CTDP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTDP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9150
GTEX Portal (Tissue expression)CTDP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5B0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5B0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5B0
Splice isoforms : SwissVarQ9Y5B0
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   
PhosPhoSitePlusQ9Y5B0
Domaine pattern : Prosite (Expaxy)BRCT (PS50172)    FCP1 (PS50969)   
Domains : Interpro (EBI)BRCT_dom    FCP1_C    FCP1_dom    FCP1_euk    HAD-like_dom   
Domain families : Pfam (Sanger)FCP1_C (PF09309)    NIF (PF03031)   
Domain families : Pfam (NCBI)pfam09309    pfam03031   
Domain families : Smart (EMBL)BRCT (SM00292)  CPDc (SM00577)  
Conserved Domain (NCBI)CTDP1
DMDM Disease mutations9150
Blocks (Seattle)CTDP1
PDB (SRS)1J2X    1ONV    2K7L   
PDB (PDBSum)1J2X    1ONV    2K7L   
PDB (IMB)1J2X    1ONV    2K7L   
PDB (RSDB)1J2X    1ONV    2K7L   
Structural Biology KnowledgeBase1J2X    1ONV    2K7L   
SCOP (Structural Classification of Proteins)1J2X    1ONV    2K7L   
CATH (Classification of proteins structures)1J2X    1ONV    2K7L   
SuperfamilyQ9Y5B0
Human Protein AtlasENSG00000060069
Peptide AtlasQ9Y5B0
HPRD05377
IPIIPI00410256   IPI00410257   IPI00410258   IPI01008810   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5B0
IntAct (EBI)Q9Y5B0
FunCoupENSG00000060069
BioGRIDCTDP1
STRING (EMBL)CTDP1
ZODIACCTDP1
Ontologies - Pathways
QuickGOQ9Y5B0
Ontology : AmiGOspindle pole  TFIIF-class transcription factor binding  phosphoprotein phosphatase activity  protein binding  nucleus  nucleoplasm  cytoplasm  centrosome  spindle  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  protein dephosphorylation  CTD phosphatase activity  exit from mitosis  actin cytoskeleton  DNA-directed RNA polymerase II, holoenzyme  nuclear speck  midbody  Tat protein binding  protein complex  positive regulation by host of viral transcription  positive regulation of viral transcription  spindle midzone  cell division  negative regulation of cell growth involved in cardiac muscle cell development  dephosphorylation of RNA polymerase II C-terminal domain  
Ontology : EGO-EBIspindle pole  TFIIF-class transcription factor binding  phosphoprotein phosphatase activity  protein binding  nucleus  nucleoplasm  cytoplasm  centrosome  spindle  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  protein dephosphorylation  CTD phosphatase activity  exit from mitosis  actin cytoskeleton  DNA-directed RNA polymerase II, holoenzyme  nuclear speck  midbody  Tat protein binding  protein complex  positive regulation by host of viral transcription  positive regulation of viral transcription  spindle midzone  cell division  negative regulation of cell growth involved in cardiac muscle cell development  dephosphorylation of RNA polymerase II C-terminal domain  
NDEx NetworkCTDP1
Atlas of Cancer Signalling NetworkCTDP1
Wikipedia pathwaysCTDP1
Orthology - Evolution
OrthoDB9150
GeneTree (enSembl)ENSG00000060069
Phylogenetic Trees/Animal Genes : TreeFamCTDP1
HOVERGENQ9Y5B0
HOGENOMQ9Y5B0
Homologs : HomoloGeneCTDP1
Homology/Alignments : Family Browser (UCSC)CTDP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTDP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTDP1
dbVarCTDP1
ClinVarCTDP1
1000_GenomesCTDP1 
Exome Variant ServerCTDP1
ExAC (Exome Aggregation Consortium)CTDP1 (select the gene name)
Genetic variants : HAPMAP9150
Genomic Variants (DGV)CTDP1 [DGVbeta]
DECIPHERCTDP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTDP1 
Mutations
ICGC Data PortalCTDP1 
TCGA Data PortalCTDP1 
Broad Tumor PortalCTDP1
OASIS PortalCTDP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTDP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTDP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTDP1
DgiDB (Drug Gene Interaction Database)CTDP1
DoCM (Curated mutations)CTDP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTDP1 (select a term)
intoGenCTDP1
Cancer3DCTDP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604168    604927   
Orphanet10625   
MedgenCTDP1
Genetic Testing Registry CTDP1
NextProtQ9Y5B0 [Medical]
TSGene9150
GENETestsCTDP1
Target ValidationCTDP1
Huge Navigator CTDP1 [HugePedia]
snp3D : Map Gene to Disease9150
BioCentury BCIQCTDP1
ClinGenCTDP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9150
Chemical/Pharm GKB GenePA27001
Clinical trialCTDP1
Miscellaneous
canSAR (ICR)CTDP1 (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTDP1
EVEXCTDP1
GoPubMedCTDP1
iHOPCTDP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:04:12 CEST 2017

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