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CTDSP1 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1)

Identity

Alias_namesCTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
Alias_symbol (synonym)NLIIF
SCP1
Other aliasNIF3
NLI-IF
HGNC (Hugo) CTDSP1
LocusID (NCBI) 58190
Atlas_Id 62180
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219263061 and ends at 219270664 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACACB (12q24.11) / CTDSP1 (2q35)CASC3 (17q21.1) / CTDSP1 (2q35)CTDSP1 (2q35) / CTDSP1 (2q35)
CTDSP1 (2q35) / RPS5 (19q13.43)SNTB2 (16q22.1) / CTDSP1 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTDSP1   21614
Cards
Entrez_Gene (NCBI)CTDSP1  58190  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
AliasesNIF3; NLI-IF; NLIIF; SCP1
GeneCards (Weizmann)CTDSP1
Ensembl hg19 (Hinxton)ENSG00000144579 [Gene_View]  chr2:219263061-219270664 [Contig_View]  CTDSP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000144579 [Gene_View]  chr2:219263061-219270664 [Contig_View]  CTDSP1 [Vega]
ICGC DataPortalENSG00000144579
TCGA cBioPortalCTDSP1
AceView (NCBI)CTDSP1
Genatlas (Paris)CTDSP1
WikiGenes58190
SOURCE (Princeton)CTDSP1
Genetics Home Reference (NIH)CTDSP1
Genomic and cartography
GoldenPath hg19 (UCSC)CTDSP1  -     chr2:219263061-219270664 +  2q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTDSP1  -     2q35   [Description]    (hg38-Dec_2013)
EnsemblCTDSP1 - 2q35 [CytoView hg19]  CTDSP1 - 2q35 [CytoView hg38]
Mapping of homologs : NCBICTDSP1 [Mapview hg19]  CTDSP1 [Mapview hg38]
OMIM605323   
Gene and transcription
Genbank (Entrez)AF217969 AF229162 AF258582 AK075090 AY279529
RefSeq transcript (Entrez)NM_001206878 NM_001206879 NM_021198 NM_182642
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_030418 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)CTDSP1
Cluster EST : UnigeneHs.444468 [ NCBI ]
CGAP (NCI)Hs.444468
Alternative Splicing GalleryENSG00000144579
Gene ExpressionCTDSP1 [ NCBI-GEO ]   CTDSP1 [ EBI - ARRAY_EXPRESS ]   CTDSP1 [ SEEK ]   CTDSP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTDSP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58190
GTEX Portal (Tissue expression)CTDSP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZU7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZU7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZU7
Splice isoforms : SwissVarQ9GZU7
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   
PhosPhoSitePlusQ9GZU7
Domaine pattern : Prosite (Expaxy)FCP1 (PS50969)   
Domains : Interpro (EBI)Dullard_phosphatase    HAD-like_dom    NIF   
Domain families : Pfam (Sanger)NIF (PF03031)   
Domain families : Pfam (NCBI)pfam03031   
Domain families : Smart (EMBL)CPDc (SM00577)  
Conserved Domain (NCBI)CTDSP1
DMDM Disease mutations58190
Blocks (Seattle)CTDSP1
PDB (SRS)1T9Z    1TA0    2GHQ    2GHT    3L0B    3L0C    3L0Y    3PGL   
PDB (PDBSum)1T9Z    1TA0    2GHQ    2GHT    3L0B    3L0C    3L0Y    3PGL   
PDB (IMB)1T9Z    1TA0    2GHQ    2GHT    3L0B    3L0C    3L0Y    3PGL   
PDB (RSDB)1T9Z    1TA0    2GHQ    2GHT    3L0B    3L0C    3L0Y    3PGL   
Structural Biology KnowledgeBase1T9Z    1TA0    2GHQ    2GHT    3L0B    3L0C    3L0Y    3PGL   
SCOP (Structural Classification of Proteins)1T9Z    1TA0    2GHQ    2GHT    3L0B    3L0C    3L0Y    3PGL   
CATH (Classification of proteins structures)1T9Z    1TA0    2GHQ    2GHT    3L0B    3L0C    3L0Y    3PGL   
SuperfamilyQ9GZU7
Human Protein AtlasENSG00000144579
Peptide AtlasQ9GZU7
HPRD05615
IPIIPI00009633   IPI00385297   IPI00449718   IPI01017943   IPI00927233   IPI00924899   IPI00926023   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZU7
IntAct (EBI)Q9GZU7
FunCoupENSG00000144579
BioGRIDCTDSP1
STRING (EMBL)CTDSP1
ZODIACCTDSP1
Ontologies - Pathways
QuickGOQ9GZU7
Ontology : AmiGOnegative regulation of protein phosphorylation  protein binding  nucleus  nucleus  regulation of transcription from RNA polymerase II promoter  protein dephosphorylation  CTD phosphatase activity  negative regulation of neuron differentiation  metal ion binding  extracellular exosome  negative regulation of G1/S transition of mitotic cell cycle  
Ontology : EGO-EBInegative regulation of protein phosphorylation  protein binding  nucleus  nucleus  regulation of transcription from RNA polymerase II promoter  protein dephosphorylation  CTD phosphatase activity  negative regulation of neuron differentiation  metal ion binding  extracellular exosome  negative regulation of G1/S transition of mitotic cell cycle  
NDEx NetworkCTDSP1
Atlas of Cancer Signalling NetworkCTDSP1
Wikipedia pathwaysCTDSP1
Orthology - Evolution
OrthoDB58190
GeneTree (enSembl)ENSG00000144579
Phylogenetic Trees/Animal Genes : TreeFamCTDSP1
HOVERGENQ9GZU7
HOGENOMQ9GZU7
Homologs : HomoloGeneCTDSP1
Homology/Alignments : Family Browser (UCSC)CTDSP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTDSP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTDSP1
dbVarCTDSP1
ClinVarCTDSP1
1000_GenomesCTDSP1 
Exome Variant ServerCTDSP1
ExAC (Exome Aggregation Consortium)CTDSP1 (select the gene name)
Genetic variants : HAPMAP58190
Genomic Variants (DGV)CTDSP1 [DGVbeta]
DECIPHER (Syndromes)2:219263061-219270664  ENSG00000144579
CONAN: Copy Number AnalysisCTDSP1 
Mutations
ICGC Data PortalCTDSP1 
TCGA Data PortalCTDSP1 
Broad Tumor PortalCTDSP1
OASIS PortalCTDSP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTDSP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTDSP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTDSP1
DgiDB (Drug Gene Interaction Database)CTDSP1
DoCM (Curated mutations)CTDSP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTDSP1 (select a term)
intoGenCTDSP1
Cancer3DCTDSP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605323   
Orphanet
MedgenCTDSP1
Genetic Testing Registry CTDSP1
NextProtQ9GZU7 [Medical]
TSGene58190
GENETestsCTDSP1
Huge Navigator CTDSP1 [HugePedia]
snp3D : Map Gene to Disease58190
BioCentury BCIQCTDSP1
ClinGenCTDSP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58190
Chemical/Pharm GKB GenePA134938848
Clinical trialCTDSP1
Miscellaneous
canSAR (ICR)CTDSP1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTDSP1
EVEXCTDSP1
GoPubMedCTDSP1
iHOPCTDSP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:39 CET 2017

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