Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CTDSPL2 (CTD small phosphatase like 2)

Identity

Alias_namesCTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
Alias_symbol (synonym)HSPC129
FLJ10523
Other aliasHSPC058
HGNC (Hugo) CTDSPL2
LocusID (NCBI) 51496
Atlas_Id 62181
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 44427381 and ends at 44527231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CTDSPL2 (15q15.3) / CTDSPL2 (15q15.3)CTDSPL2 (15q15.3) / NME3 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTDSPL2   26936
Cards
Entrez_Gene (NCBI)CTDSPL2  51496  CTD small phosphatase like 2
AliasesHSPC058; HSPC129
GeneCards (Weizmann)CTDSPL2
Ensembl hg19 (Hinxton)ENSG00000137770 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137770 [Gene_View]  chr15:44427381-44527231 [Contig_View]  CTDSPL2 [Vega]
ICGC DataPortalENSG00000137770
TCGA cBioPortalCTDSPL2
AceView (NCBI)CTDSPL2
Genatlas (Paris)CTDSPL2
WikiGenes51496
SOURCE (Princeton)CTDSPL2
Genetics Home Reference (NIH)CTDSPL2
Genomic and cartography
GoldenPath hg38 (UCSC)CTDSPL2  -     chr15:44427381-44527231 +  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTDSPL2  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblCTDSPL2 - 15q15.3 [CytoView hg19]  CTDSPL2 - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBICTDSPL2 [Mapview hg19]  CTDSPL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161478 AF161543 AK001385 AK128644 AK226094
RefSeq transcript (Entrez)NM_016396
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTDSPL2
Cluster EST : UnigeneHs.497967 [ NCBI ]
CGAP (NCI)Hs.497967
Alternative Splicing GalleryENSG00000137770
Gene ExpressionCTDSPL2 [ NCBI-GEO ]   CTDSPL2 [ EBI - ARRAY_EXPRESS ]   CTDSPL2 [ SEEK ]   CTDSPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)CTDSPL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51496
GTEX Portal (Tissue expression)CTDSPL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ05D32   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ05D32  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ05D32
Splice isoforms : SwissVarQ05D32
PhosPhoSitePlusQ05D32
Domaine pattern : Prosite (Expaxy)FCP1 (PS50969)   
Domains : Interpro (EBI)Dullard_phosphatase    FCP1_dom    HAD-like_dom   
Domain families : Pfam (Sanger)NIF (PF03031)   
Domain families : Pfam (NCBI)pfam03031   
Domain families : Smart (EMBL)CPDc (SM00577)  
Conserved Domain (NCBI)CTDSPL2
DMDM Disease mutations51496
Blocks (Seattle)CTDSPL2
SuperfamilyQ05D32
Human Protein AtlasENSG00000137770
Peptide AtlasQ05D32
HPRD13697
IPIIPI00033054   IPI00871437   
Protein Interaction databases
DIP (DOE-UCLA)Q05D32
IntAct (EBI)Q05D32
FunCoupENSG00000137770
BioGRIDCTDSPL2
STRING (EMBL)CTDSPL2
ZODIACCTDSPL2
Ontologies - Pathways
QuickGOQ05D32
Ontology : AmiGOphosphoprotein phosphatase activity  nucleoplasm  protein dephosphorylation  negative regulation of BMP signaling pathway  positive regulation of protein export from nucleus  
Ontology : EGO-EBIphosphoprotein phosphatase activity  nucleoplasm  protein dephosphorylation  negative regulation of BMP signaling pathway  positive regulation of protein export from nucleus  
NDEx NetworkCTDSPL2
Atlas of Cancer Signalling NetworkCTDSPL2
Wikipedia pathwaysCTDSPL2
Orthology - Evolution
OrthoDB51496
GeneTree (enSembl)ENSG00000137770
Phylogenetic Trees/Animal Genes : TreeFamCTDSPL2
HOVERGENQ05D32
HOGENOMQ05D32
Homologs : HomoloGeneCTDSPL2
Homology/Alignments : Family Browser (UCSC)CTDSPL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTDSPL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTDSPL2
dbVarCTDSPL2
ClinVarCTDSPL2
1000_GenomesCTDSPL2 
Exome Variant ServerCTDSPL2
ExAC (Exome Aggregation Consortium)CTDSPL2 (select the gene name)
Genetic variants : HAPMAP51496
Genomic Variants (DGV)CTDSPL2 [DGVbeta]
DECIPHERCTDSPL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTDSPL2 
Mutations
ICGC Data PortalCTDSPL2 
TCGA Data PortalCTDSPL2 
Broad Tumor PortalCTDSPL2
OASIS PortalCTDSPL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTDSPL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTDSPL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTDSPL2
DgiDB (Drug Gene Interaction Database)CTDSPL2
DoCM (Curated mutations)CTDSPL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTDSPL2 (select a term)
intoGenCTDSPL2
Cancer3DCTDSPL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCTDSPL2
Genetic Testing Registry CTDSPL2
NextProtQ05D32 [Medical]
TSGene51496
GENETestsCTDSPL2
Target ValidationCTDSPL2
Huge Navigator CTDSPL2 [HugePedia]
snp3D : Map Gene to Disease51496
BioCentury BCIQCTDSPL2
ClinGenCTDSPL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51496
Chemical/Pharm GKB GenePA142672063
Clinical trialCTDSPL2
Miscellaneous
canSAR (ICR)CTDSPL2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTDSPL2
EVEXCTDSPL2
GoPubMedCTDSPL2
iHOPCTDSPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:44:52 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.