Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CTF1 (cardiotrophin 1)

Identity

Alias_symbol (synonym)CT-1
CT1
Other alias
HGNC (Hugo) CTF1
LocusID (NCBI) 1489
Atlas_Id 40191
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30896607 and ends at 30903560 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTF1 (16p11.2) / BCL7C (16p11.2)CTF1 16p11.2 / BCL7C 16p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTF1   2499
LRG (Locus Reference Genomic)LRG_408
Cards
Entrez_Gene (NCBI)CTF1  1489  cardiotrophin 1
AliasesCT-1; CT1
GeneCards (Weizmann)CTF1
Ensembl hg19 (Hinxton)ENSG00000150281 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150281 [Gene_View]  chr16:30896607-30903560 [Contig_View]  CTF1 [Vega]
ICGC DataPortalENSG00000150281
TCGA cBioPortalCTF1
AceView (NCBI)CTF1
Genatlas (Paris)CTF1
WikiGenes1489
SOURCE (Princeton)CTF1
Genetics Home Reference (NIH)CTF1
Genomic and cartography
GoldenPath hg38 (UCSC)CTF1  -     chr16:30896607-30903560 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTF1  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblCTF1 - 16p11.2 [CytoView hg19]  CTF1 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBICTF1 [Mapview hg19]  CTF1 [Mapview hg38]
OMIM600435   
Gene and transcription
Genbank (Entrez)BC036787 BC049822 BC064416 U43030
RefSeq transcript (Entrez)NM_001142544 NM_001330
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTF1
Cluster EST : UnigeneHs.483811 [ NCBI ]
CGAP (NCI)Hs.483811
Alternative Splicing GalleryENSG00000150281
Gene ExpressionCTF1 [ NCBI-GEO ]   CTF1 [ EBI - ARRAY_EXPRESS ]   CTF1 [ SEEK ]   CTF1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1489
GTEX Portal (Tissue expression)CTF1
Human Protein AtlasENSG00000150281-CTF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16619   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16619  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16619
Splice isoforms : SwissVarQ16619
PhosPhoSitePlusQ16619
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    PRF   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTF1
DMDM Disease mutations1489
Blocks (Seattle)CTF1
SuperfamilyQ16619
Human Protein Atlas [tissue]ENSG00000150281-CTF1 [tissue]
Peptide AtlasQ16619
HPRD02699
IPIIPI00003357   IPI00645899   
Protein Interaction databases
DIP (DOE-UCLA)Q16619
IntAct (EBI)Q16619
FunCoupENSG00000150281
BioGRIDCTF1
STRING (EMBL)CTF1
ZODIACCTF1
Ontologies - Pathways
QuickGOQ16619
Ontology : AmiGOcytokine activity  leukemia inhibitory factor receptor binding  protein binding  extracellular region  extracellular region  extracellular space  cell surface receptor signaling pathway  cell-cell signaling  nervous system development  muscle organ development  cell proliferation  positive regulation of cell proliferation  neuron development  leukemia inhibitory factor signaling pathway  
Ontology : EGO-EBIcytokine activity  leukemia inhibitory factor receptor binding  protein binding  extracellular region  extracellular region  extracellular space  cell surface receptor signaling pathway  cell-cell signaling  nervous system development  muscle organ development  cell proliferation  positive regulation of cell proliferation  neuron development  leukemia inhibitory factor signaling pathway  
Pathways : BIOCARTANFAT and Hypertrophy of the heart (Transcription in the broken heart) [Genes]   
Pathways : KEGGCytokine-cytokine receptor interaction    Jak-STAT signaling pathway   
NDEx NetworkCTF1
Atlas of Cancer Signalling NetworkCTF1
Wikipedia pathwaysCTF1
Orthology - Evolution
OrthoDB1489
GeneTree (enSembl)ENSG00000150281
Phylogenetic Trees/Animal Genes : TreeFamCTF1
HOVERGENQ16619
HOGENOMQ16619
Homologs : HomoloGeneCTF1
Homology/Alignments : Family Browser (UCSC)CTF1
Gene fusions - Rearrangements
Fusion : MitelmanCTF1/BCL7C [16p11.2/16p11.2]  
Fusion: TCGA_MDACCCTF1 16p11.2 BCL7C 16p11.2 BRCA
Tumor Fusion PortalCTF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTF1
dbVarCTF1
ClinVarCTF1
1000_GenomesCTF1 
Exome Variant ServerCTF1
ExAC (Exome Aggregation Consortium)ENSG00000150281
GNOMAD BrowserENSG00000150281
Genetic variants : HAPMAP1489
Genomic Variants (DGV)CTF1 [DGVbeta]
DECIPHERCTF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTF1 
Mutations
ICGC Data PortalCTF1 
TCGA Data PortalCTF1 
Broad Tumor PortalCTF1
OASIS PortalCTF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Zhejiang University Center for Genetic and Genomic Medicine (ZJU-CGGM)
BioMutasearch CTF1
DgiDB (Drug Gene Interaction Database)CTF1
DoCM (Curated mutations)CTF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTF1 (select a term)
intoGenCTF1
Cancer3DCTF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600435   
Orphanet
DisGeNETCTF1
MedgenCTF1
Genetic Testing Registry CTF1
NextProtQ16619 [Medical]
TSGene1489
GENETestsCTF1
Target ValidationCTF1
Huge Navigator CTF1 [HugePedia]
snp3D : Map Gene to Disease1489
BioCentury BCIQCTF1
ClinGenCTF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1489
Chemical/Pharm GKB GenePA27002
Clinical trialCTF1
Miscellaneous
canSAR (ICR)CTF1 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTF1
EVEXCTF1
GoPubMedCTF1
iHOPCTF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:09:25 CET 2017

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