Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CTIF (cap binding complex dependent translation initiation factor)

Identity

Alias_namesKIAA0427
KIAA0427
CBP80/20-dependent translation initiation factor
Other aliasGm672
HGNC (Hugo) CTIF
LocusID (NCBI) 9811
Atlas_Id 62184
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 48539056 and ends at 48863215 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CTIF (18q21.1) / GLTSCR1 (19q13.33)CTIF (18q21.1) / GRM4 (6p21.31)CTIF (18q21.1) / PSTPIP2 (18q21.1)
CTIF (18q21.1) / SDHAF4 (6q13)CTIF (18q21.1) / SETD6 (16q21)CTIF (18q21.1) / SMAD2 (18q21.1)
CTIF (18q21.1) / TIMP2 (17q25.3)CTIF (18q21.1) / WASF2 (1p36.11)DYM (18q21.1) / CTIF (18q21.1)
GTF2F2 (13q14.12) / CTIF (18q21.1)SETD6 (16q21) / CTIF (18q21.1)CTIF WASF2
CTIF SMAD2CTIF GRM4CTIF C6orf57
CTIF PSTPIP2DYM CTIFGTF2F2 CTIF

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTIF   23925
Cards
Entrez_Gene (NCBI)CTIF  9811  cap binding complex dependent translation initiation factor
AliasesGm672; KIAA0427
GeneCards (Weizmann)CTIF
Ensembl hg19 (Hinxton)ENSG00000134030 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134030 [Gene_View]  chr18:48539056-48863215 [Contig_View]  CTIF [Vega]
ICGC DataPortalENSG00000134030
TCGA cBioPortalCTIF
AceView (NCBI)CTIF
Genatlas (Paris)CTIF
WikiGenes9811
SOURCE (Princeton)CTIF
Genetics Home Reference (NIH)CTIF
Genomic and cartography
GoldenPath hg38 (UCSC)CTIF  -     chr18:48539056-48863215 +  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTIF  -     18q21.1   [Description]    (hg19-Feb_2009)
EnsemblCTIF - 18q21.1 [CytoView hg19]  CTIF - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBICTIF [Mapview hg19]  CTIF [Mapview hg38]
OMIM613178   
Gene and transcription
Genbank (Entrez)AB007887 AK095970 BC042146 BU688371
RefSeq transcript (Entrez)NM_001142397 NM_014772
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTIF
Cluster EST : UnigeneHs.145230 [ NCBI ]
CGAP (NCI)Hs.145230
Alternative Splicing GalleryENSG00000134030
Gene ExpressionCTIF [ NCBI-GEO ]   CTIF [ EBI - ARRAY_EXPRESS ]   CTIF [ SEEK ]   CTIF [ MEM ]
Gene Expression Viewer (FireBrowse)CTIF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9811
GTEX Portal (Tissue expression)CTIF
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43310   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43310  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43310
Splice isoforms : SwissVarO43310
PhosPhoSitePlusO43310
Domains : Interpro (EBI)ARM-type_fold    MIF4-like    MIF4G-like_typ-3   
Domain families : Pfam (Sanger)MIF4G (PF02854)   
Domain families : Pfam (NCBI)pfam02854   
Domain families : Smart (EMBL)MIF4G (SM00543)  
Conserved Domain (NCBI)CTIF
DMDM Disease mutations9811
Blocks (Seattle)CTIF
SuperfamilyO43310
Human Protein AtlasENSG00000134030
Peptide AtlasO43310
HPRD11083
IPIIPI00604690   IPI00011951   IPI00902575   
Protein Interaction databases
DIP (DOE-UCLA)O43310
IntAct (EBI)O43310
FunCoupENSG00000134030
BioGRIDCTIF
STRING (EMBL)CTIF
ZODIACCTIF
Ontologies - Pathways
QuickGOO43310
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  protein binding  cytosol  regulation of translational initiation  perinuclear region of cytoplasm  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  protein binding  cytosol  regulation of translational initiation  perinuclear region of cytoplasm  
NDEx NetworkCTIF
Atlas of Cancer Signalling NetworkCTIF
Wikipedia pathwaysCTIF
Orthology - Evolution
OrthoDB9811
GeneTree (enSembl)ENSG00000134030
Phylogenetic Trees/Animal Genes : TreeFamCTIF
HOVERGENO43310
HOGENOMO43310
Homologs : HomoloGeneCTIF
Homology/Alignments : Family Browser (UCSC)CTIF
Gene fusions - Rearrangements
Fusion: TCGACTIF WASF2
Fusion: TCGACTIF SMAD2
Fusion: TCGACTIF GRM4
Fusion: TCGACTIF C6orf57
Fusion: TCGACTIF PSTPIP2
Fusion: TCGADYM CTIF
Fusion: TCGAGTF2F2 CTIF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTIF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTIF
dbVarCTIF
ClinVarCTIF
1000_GenomesCTIF 
Exome Variant ServerCTIF
ExAC (Exome Aggregation Consortium)CTIF (select the gene name)
Genetic variants : HAPMAP9811
Genomic Variants (DGV)CTIF [DGVbeta]
DECIPHERCTIF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTIF 
Mutations
ICGC Data PortalCTIF 
TCGA Data PortalCTIF 
Broad Tumor PortalCTIF
OASIS PortalCTIF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTIF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTIF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTIF
DgiDB (Drug Gene Interaction Database)CTIF
DoCM (Curated mutations)CTIF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTIF (select a term)
intoGenCTIF
Cancer3DCTIF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613178   
Orphanet
MedgenCTIF
Genetic Testing Registry CTIF
NextProtO43310 [Medical]
TSGene9811
GENETestsCTIF
Target ValidationCTIF
Huge Navigator CTIF [HugePedia]
snp3D : Map Gene to Disease9811
BioCentury BCIQCTIF
ClinGenCTIF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9811
Chemical/Pharm GKB GenePA134974369
Clinical trialCTIF
Miscellaneous
canSAR (ICR)CTIF (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTIF
EVEXCTIF
GoPubMedCTIF
iHOPCTIF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:44:52 CEST 2017

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