Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CTNNAL1 (catenin alpha like 1)

Identity

Alias (NCBI)ACRP
CLLP
alpha-CATU
HGNC (Hugo) CTNNAL1
HGNC Alias symbCLLP
alpha-CATU
HGNC Alias namealpha-catulin
 alpha2-catulin
HGNC Previous namecatenin (cadherin-associated protein), alpha-like 1
 catenin alpha-like 1
LocusID (NCBI) 8727
Atlas_Id 40194
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 108942577 and ends at 109013499 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTNNAL1 (9q31.3) / ZBTB7C (18q21.1)DAP (5p15.2) / CTNNAL1 (9q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CTNNAL1   2512
Cards
Entrez_Gene (NCBI)CTNNAL1    catenin alpha like 1
AliasesACRP; CLLP; alpha-CATU
GeneCards (Weizmann)CTNNAL1
Ensembl hg19 (Hinxton)ENSG00000119326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119326 [Gene_View]  ENSG00000119326 [Sequence]  chr9:108942577-109013499 [Contig_View]  CTNNAL1 [Vega]
ICGC DataPortalENSG00000119326
TCGA cBioPortalCTNNAL1
AceView (NCBI)CTNNAL1
Genatlas (Paris)CTNNAL1
SOURCE (Princeton)CTNNAL1
Genetics Home Reference (NIH)CTNNAL1
Genomic and cartography
GoldenPath hg38 (UCSC)CTNNAL1  -     chr9:108942577-109013499 -  9q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTNNAL1  -     9q31.3   [Description]    (hg19-Feb_2009)
GoldenPathCTNNAL1 - 9q31.3 [CytoView hg19]  CTNNAL1 - 9q31.3 [CytoView hg38]
ImmunoBaseENSG00000119326
genome Data Viewer NCBICTNNAL1 [Mapview hg19]  
OMIM604785   
Gene and transcription
Genbank (Entrez)AB451283 AB451415 AF006070 AF030233 AF080071
RefSeq transcript (Entrez)NM_001286974 NM_003798
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTNNAL1
Alternative Splicing GalleryENSG00000119326
Gene ExpressionCTNNAL1 [ NCBI-GEO ]   CTNNAL1 [ EBI - ARRAY_EXPRESS ]   CTNNAL1 [ SEEK ]   CTNNAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTNNAL1 [ Firebrowse - Broad ]
GenevisibleExpression of CTNNAL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8727
GTEX Portal (Tissue expression)CTNNAL1
Human Protein AtlasENSG00000119326-CTNNAL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBT7
Splice isoforms : SwissVarQ9UBT7
PhosPhoSitePlusQ9UBT7
Domains : Interpro (EBI)Alpha-catenin/vinculin-like_sf    Alpha_catenin    CTNNAL1    Vinculin/catenin   
Domain families : Pfam (Sanger)Vinculin (PF01044)   
Domain families : Pfam (NCBI)pfam01044   
Conserved Domain (NCBI)CTNNAL1
Blocks (Seattle)CTNNAL1
SuperfamilyQ9UBT7
Human Protein Atlas [tissue]ENSG00000119326-CTNNAL1 [tissue]
Peptide AtlasQ9UBT7
HPRD09210
IPIIPI00179328   IPI00549924   IPI00000163   IPI00643624   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBT7
IntAct (EBI)Q9UBT7
BioGRIDCTNNAL1
STRING (EMBL)CTNNAL1
ZODIACCTNNAL1
Ontologies - Pathways
QuickGOQ9UBT7
Ontology : AmiGOprotein binding  cytosol  cytoskeleton  plasma membrane  cell adhesion  Rho protein signal transduction  cadherin binding  actin filament binding  
Ontology : EGO-EBIprotein binding  cytosol  cytoskeleton  plasma membrane  cell adhesion  Rho protein signal transduction  cadherin binding  actin filament binding  
NDEx NetworkCTNNAL1
Atlas of Cancer Signalling NetworkCTNNAL1
Wikipedia pathwaysCTNNAL1
Orthology - Evolution
OrthoDB8727
GeneTree (enSembl)ENSG00000119326
Phylogenetic Trees/Animal Genes : TreeFamCTNNAL1
HOGENOMQ9UBT7
Homologs : HomoloGeneCTNNAL1
Homology/Alignments : Family Browser (UCSC)CTNNAL1
Gene fusions - Rearrangements
Fusion : QuiverCTNNAL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTNNAL1 [hg38]
dbVarCTNNAL1
ClinVarCTNNAL1
MonarchCTNNAL1
1000_GenomesCTNNAL1 
Exome Variant ServerCTNNAL1
GNOMAD BrowserENSG00000119326
Varsome BrowserCTNNAL1
Genomic Variants (DGV)CTNNAL1 [DGVbeta]
DECIPHERCTNNAL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTNNAL1 
Mutations
ICGC Data PortalCTNNAL1 
TCGA Data PortalCTNNAL1 
Broad Tumor PortalCTNNAL1
OASIS PortalCTNNAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTNNAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCTNNAL1
Mutations and Diseases : HGMDCTNNAL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTNNAL1
DgiDB (Drug Gene Interaction Database)CTNNAL1
DoCM (Curated mutations)CTNNAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTNNAL1 (select a term)
intoGenCTNNAL1
Cancer3DCTNNAL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604785   
Orphanet
DisGeNETCTNNAL1
MedgenCTNNAL1
Genetic Testing Registry CTNNAL1
NextProtQ9UBT7 [Medical]
GENETestsCTNNAL1
Target ValidationCTNNAL1
Huge Navigator CTNNAL1 [HugePedia]
ClinGenCTNNAL1
Clinical trials, drugs, therapy
MyCancerGenomeCTNNAL1
Protein Interactions : CTD
Pharm GKB GenePA27011
PharosQ9UBT7
Clinical trialCTNNAL1
Miscellaneous
canSAR (ICR)CTNNAL1 (select the gene name)
HarmonizomeCTNNAL1
DataMed IndexCTNNAL1
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCTNNAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:11:49 CET 2021
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