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CTNNBL1 (catenin beta like 1)

Identity

Alias_namesC20orf33
chromosome 20 open reading frame 33
catenin, beta like 1
Alias_symbol (synonym)FLJ21108
P14L
P14
NAP
NYD-SP19
Other aliasPP8304
dJ633O20.1
HGNC (Hugo) CTNNBL1
LocusID (NCBI) 56259
Atlas_Id 40196
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 36322357 and ends at 36500531 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CTNNBL1 (20q11.23) / ANP32B (9q22.33)CTNNBL1 (20q11.23) / CTNNBL1 (20q11.23)CTNNBL1 (20q11.23) / TTI1 (20q11.23)
IFNAR1 (21q22.11) / CTNNBL1 (20q11.23)RALGAPB (20q11.23) / CTNNBL1 (20q11.23)RBL1 (20q11.23) / CTNNBL1 (20q11.23)
RPRD1B (20q11.23) / CTNNBL1 (20q11.23)VSTM2L (20q11.23) / CTNNBL1 (20q11.23)CTNNBL1 20q11.23 / TTI1 20q11.23
RALGAPB 20q11.23 / CTNNBL1 20q11.23RBL1 20q11.23 / CTNNBL1 20q11.23RPRD1B 20q11.23 / CTNNBL1 20q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTNNBL1   15879
Cards
Entrez_Gene (NCBI)CTNNBL1  56259  catenin beta like 1
AliasesC20orf33; NAP; P14L; PP8304; 
dJ633O20.1
GeneCards (Weizmann)CTNNBL1
Ensembl hg19 (Hinxton)ENSG00000132792 [Gene_View]  chr20:36322357-36500531 [Contig_View]  CTNNBL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132792 [Gene_View]  chr20:36322357-36500531 [Contig_View]  CTNNBL1 [Vega]
ICGC DataPortalENSG00000132792
TCGA cBioPortalCTNNBL1
AceView (NCBI)CTNNBL1
Genatlas (Paris)CTNNBL1
WikiGenes56259
SOURCE (Princeton)CTNNBL1
Genetics Home Reference (NIH)CTNNBL1
Genomic and cartography
GoldenPath hg19 (UCSC)CTNNBL1  -     chr20:36322357-36500531 +  20q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTNNBL1  -     20q11.23   [Description]    (hg38-Dec_2013)
EnsemblCTNNBL1 - 20q11.23 [CytoView hg19]  CTNNBL1 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBICTNNBL1 [Mapview hg19]  CTNNBL1 [Mapview hg38]
OMIM611537   
Gene and transcription
Genbank (Entrez)AA469176 AF086002 AF239607 AF367471 AF370431
RefSeq transcript (Entrez)NM_001281495 NM_030877
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)CTNNBL1
Cluster EST : UnigeneHs.472667 [ NCBI ]
CGAP (NCI)Hs.472667
Alternative Splicing GalleryENSG00000132792
Gene ExpressionCTNNBL1 [ NCBI-GEO ]   CTNNBL1 [ EBI - ARRAY_EXPRESS ]   CTNNBL1 [ SEEK ]   CTNNBL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTNNBL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56259
GTEX Portal (Tissue expression)CTNNBL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WYA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WYA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WYA6
Splice isoforms : SwissVarQ8WYA6
PhosPhoSitePlusQ8WYA6
Domains : Interpro (EBI)ARM-like    ARM-type_fold    CTNNBL1_N   
Domain families : Pfam (Sanger)CTNNBL (PF08216)   
Domain families : Pfam (NCBI)pfam08216   
Conserved Domain (NCBI)CTNNBL1
DMDM Disease mutations56259
Blocks (Seattle)CTNNBL1
PDB (SRS)4CB8    4CB9    4CBA    4HM9    4HNM    4MFU    4MFV   
PDB (PDBSum)4CB8    4CB9    4CBA    4HM9    4HNM    4MFU    4MFV   
PDB (IMB)4CB8    4CB9    4CBA    4HM9    4HNM    4MFU    4MFV   
PDB (RSDB)4CB8    4CB9    4CBA    4HM9    4HNM    4MFU    4MFV   
Structural Biology KnowledgeBase4CB8    4CB9    4CBA    4HM9    4HNM    4MFU    4MFV   
SCOP (Structural Classification of Proteins)4CB8    4CB9    4CBA    4HM9    4HNM    4MFU    4MFV   
CATH (Classification of proteins structures)4CB8    4CB9    4CBA    4HM9    4HNM    4MFU    4MFV   
SuperfamilyQ8WYA6
Human Protein AtlasENSG00000132792
Peptide AtlasQ8WYA6
HPRD10850
IPIIPI00844214   IPI00645320   IPI00472981   IPI00789216   
Protein Interaction databases
DIP (DOE-UCLA)Q8WYA6
IntAct (EBI)Q8WYA6
FunCoupENSG00000132792
BioGRIDCTNNBL1
STRING (EMBL)CTNNBL1
ZODIACCTNNBL1
Ontologies - Pathways
QuickGOQ8WYA6
Ontology : AmiGOmRNA splicing, via spliceosome  Prp19 complex  protein binding  nucleus  nucleoplasm  nucleoplasm  spliceosomal complex  cytoplasm  apoptotic process  membrane  somatic diversification of immunoglobulins  enzyme binding  positive regulation of apoptotic process  
Ontology : EGO-EBImRNA splicing, via spliceosome  Prp19 complex  protein binding  nucleus  nucleoplasm  nucleoplasm  spliceosomal complex  cytoplasm  apoptotic process  membrane  somatic diversification of immunoglobulins  enzyme binding  positive regulation of apoptotic process  
Pathways : KEGGSpliceosome   
NDEx NetworkCTNNBL1
Atlas of Cancer Signalling NetworkCTNNBL1
Wikipedia pathwaysCTNNBL1
Orthology - Evolution
OrthoDB56259
GeneTree (enSembl)ENSG00000132792
Phylogenetic Trees/Animal Genes : TreeFamCTNNBL1
HOVERGENQ8WYA6
HOGENOMQ8WYA6
Homologs : HomoloGeneCTNNBL1
Homology/Alignments : Family Browser (UCSC)CTNNBL1
Gene fusions - Rearrangements
Fusion : MitelmanCTNNBL1/TTI1 [20q11.23/20q11.23]  
Fusion : MitelmanRALGAPB/CTNNBL1 [20q11.23/20q11.23]  [t(20;20)(q11;q11)]  
Fusion : MitelmanRBL1/CTNNBL1 [20q11.23/20q11.23]  [t(20;20)(q11;q11)]  
Fusion : MitelmanRPRD1B/CTNNBL1 [20q11.23/20q11.23]  [t(20;20)(q11;q11)]  
Fusion: TCGACTNNBL1 20q11.23 TTI1 20q11.23 BRCA
Fusion: TCGARALGAPB 20q11.23 CTNNBL1 20q11.23 BRCA
Fusion: TCGARBL1 20q11.23 CTNNBL1 20q11.23 BRCA
Fusion: TCGARPRD1B 20q11.23 CTNNBL1 20q11.23 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTNNBL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTNNBL1
dbVarCTNNBL1
ClinVarCTNNBL1
1000_GenomesCTNNBL1 
Exome Variant ServerCTNNBL1
ExAC (Exome Aggregation Consortium)CTNNBL1 (select the gene name)
Genetic variants : HAPMAP56259
Genomic Variants (DGV)CTNNBL1 [DGVbeta]
DECIPHER (Syndromes)20:36322357-36500531  ENSG00000132792
CONAN: Copy Number AnalysisCTNNBL1 
Mutations
ICGC Data PortalCTNNBL1 
TCGA Data PortalCTNNBL1 
Broad Tumor PortalCTNNBL1
OASIS PortalCTNNBL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTNNBL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTNNBL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTNNBL1
DgiDB (Drug Gene Interaction Database)CTNNBL1
DoCM (Curated mutations)CTNNBL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTNNBL1 (select a term)
intoGenCTNNBL1
Cancer3DCTNNBL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611537   
Orphanet
MedgenCTNNBL1
Genetic Testing Registry CTNNBL1
NextProtQ8WYA6 [Medical]
TSGene56259
GENETestsCTNNBL1
Huge Navigator CTNNBL1 [HugePedia]
snp3D : Map Gene to Disease56259
BioCentury BCIQCTNNBL1
ClinGenCTNNBL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56259
Chemical/Pharm GKB GenePA27015
Clinical trialCTNNBL1
Miscellaneous
canSAR (ICR)CTNNBL1 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTNNBL1
EVEXCTNNBL1
GoPubMedCTNNBL1
iHOPCTNNBL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:57:58 CEST 2017

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