Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CTNND2 (catenin (cadherin-associated protein), delta 2)

Identity

Other namesGT24
NPRAP
HGNC (Hugo) CTNND2
LocusID (NCBI) 1501
Location 5p15.2
Location_base_pair Starts at 10971952 and ends at 11904110 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CTNND2   2516
Cards
Entrez_Gene (NCBI)CTNND2  1501  catenin (cadherin-associated protein), delta 2
GeneCards (Weizmann)CTNND2
Ensembl (Hinxton)ENSG00000169862 [Gene_View]  chr5:10971952-11904110 [Contig_View]  CTNND2 [Vega]
AceView (NCBI)CTNND2
Genatlas (Paris)CTNND2
WikiGenes1501
SOURCE (Princeton)NM_001332
Genomic and cartography
GoldenPath (UCSC)CTNND2  -  5p15.2   chr5:10971952-11904110 -  5p15.2   [Description]    (hg19-Feb_2009)
EnsemblCTNND2 - 5p15.2 [CytoView]
Mapping of homologs : NCBICTNND2 [Mapview]
OMIM123450   604275   
Gene and transcription
Genbank (Entrez)AB013805 AF035302 AK127257 AK226124 AK294420
RefSeq transcript (Entrez)NM_001332
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NG_023544 NT_006576 NW_001838927 NW_004929321
Consensus coding sequences : CCDS (NCBI)CTNND2
Cluster EST : UnigeneHs.314543 [ NCBI ]
CGAP (NCI)Hs.314543
Alternative Splicing : Fast-db (Paris)GSHG0024660
Alternative Splicing GalleryENSG00000169862
Gene ExpressionCTNND2 [ NCBI-GEO ]     CTNND2 [ SEEK ]   CTNND2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQB3 (Uniprot)
NextProtQ9UQB3  [Medical]
With graphics : InterProQ9UQB3
Splice isoforms : SwissVarQ9UQB3 (Swissvar)
Domaine pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo   
Related proteins : CluSTrQ9UQB3
Domain families : Pfam (Sanger)Arm (PF00514)   
Domain families : Pfam (NCBI)pfam00514   
Domain families : Smart (EMBL)ARM (SM00185)  
DMDM Disease mutations1501
Blocks (Seattle)Q9UQB3
Human Protein AtlasENSG00000169862
Peptide AtlasQ9UQB3
HPRD09181
IPIIPI00301317   IPI00220032   IPI01013107   IPI00967462   IPI00968264   IPI00890767   IPI00964405   IPI00966793   IPI00967771   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQB3
IntAct (EBI)Q9UQB3
FunCoupENSG00000169862
BioGRIDCTNND2
InParanoidQ9UQB3
Interologous Interaction database Q9UQB3
IntegromeDBCTNND2
STRING (EMBL)CTNND2
Ontologies - Pathways
Ontology : AmiGOmorphogenesis of a branching structure  protein binding  nucleus  cytoplasm  adherens junction  transcription, DNA-templated  regulation of transcription, DNA-dependent  cell adhesion  neuron cell-cell adhesion  signal transduction  multicellular organismal development  learning  perikaryon  regulation of synaptic plasticity  
Ontology : EGO-EBImorphogenesis of a branching structure  protein binding  nucleus  cytoplasm  adherens junction  transcription, DNA-templated  regulation of transcription, DNA-dependent  cell adhesion  neuron cell-cell adhesion  signal transduction  multicellular organismal development  learning  perikaryon  regulation of synaptic plasticity  
REACTOMECTNND2
Protein Interaction DatabaseCTNND2
Wikipedia pathwaysCTNND2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CTNND2
SNP (GeneSNP Utah)CTNND2
SNP : HGBaseCTNND2
Genetic variants : HAPMAPCTNND2
1000_GenomesCTNND2 
ICGC programENSG00000169862 
Somatic Mutations in Cancer : COSMICCTNND2 
CONAN: Copy Number AnalysisCTNND2 
Mutations and Diseases : HGMDCTNND2
OMIM123450    604275   
GENETestsCTNND2
Disease Genetic AssociationCTNND2
Huge Navigator CTNND2 [HugePedia]  CTNND2 [HugeCancerGEM]
Genomic VariantsCTNND2  CTNND2 [DGVbeta]
Exome VariantCTNND2
dbVarCTNND2
ClinVarCTNND2
snp3D : Map Gene to Disease1501
General knowledge
Homologs : HomoloGeneCTNND2
Homology/Alignments : Family Browser (UCSC)CTNND2
Phylogenetic Trees/Animal Genes : TreeFamCTNND2
Chemical/Protein Interactions : CTD1501
Chemical/Pharm GKB GenePA27017
Clinical trialCTNND2
Cancer Resource (Charite)ENSG00000169862
Other databases
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
CoreMineCTNND2
iHOPCTNND2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Mar 31 09:24:14 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.