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CTNND2 (catenin delta 2)

Identity

Other namesGT24
NPRAP
HGNC (Hugo) CTNND2
LocusID (NCBI) 1501
Atlas_Id 40198
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 10971954 and ends at 11589029 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CTNND2 (5p15.2) / P4HA2 (5q31.1)CTNND2 (5p15.2) / TRIO (5p15.2)EHD3 (2p23.1) / CTNND2 (5p15.2)
FAS (10q23.31) / CTNND2 (5p15.2)KLHDC3 (6p21.1) / CTNND2 (5p15.2)MTF2 (1p22.1) / CTNND2 (5p15.2)
CTNND2 5p15.2 / P4HA2 5q31.1FAS 10q23.31 / CTNND2 5p15.2MTF2 1p22.1 / CTNND2 5p15.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTNND2   2516
Cards
Entrez_Gene (NCBI)CTNND2  1501  catenin delta 2
AliasesGT24; NPRAP
GeneCards (Weizmann)CTNND2
Ensembl hg19 (Hinxton)ENSG00000169862 [Gene_View]  chr5:10971954-11589029 [Contig_View]  CTNND2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169862 [Gene_View]  chr5:10971954-11589029 [Contig_View]  CTNND2 [Vega]
ICGC DataPortalENSG00000169862
TCGA cBioPortalCTNND2
AceView (NCBI)CTNND2
Genatlas (Paris)CTNND2
WikiGenes1501
SOURCE (Princeton)CTNND2
Genomic and cartography
GoldenPath hg19 (UCSC)CTNND2  -     chr5:10971954-11589029 -  5p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTNND2  -     5p15.2   [Description]    (hg38-Dec_2013)
EnsemblCTNND2 - 5p15.2 [CytoView hg19]  CTNND2 - 5p15.2 [CytoView hg38]
Mapping of homologs : NCBICTNND2 [Mapview hg19]  CTNND2 [Mapview hg38]
OMIM604275   
Gene and transcription
Genbank (Entrez)AB013805 AF035302 AI680877 AK127257 AK226124
RefSeq transcript (Entrez)NM_001288715 NM_001288716 NM_001288717 NM_001332
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_023544 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)CTNND2
Cluster EST : UnigeneHs.314543 [ NCBI ]
CGAP (NCI)Hs.314543
Alternative Splicing GalleryENSG00000169862
Gene ExpressionCTNND2 [ NCBI-GEO ]   CTNND2 [ EBI - ARRAY_EXPRESS ]   CTNND2 [ SEEK ]   CTNND2 [ MEM ]
Gene Expression Viewer (FireBrowse)CTNND2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1501
GTEX Portal (Tissue expression)CTNND2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQB3 (Uniprot)
NextProtQ9UQB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UQB3
Splice isoforms : SwissVarQ9UQB3 (Swissvar)
PhosPhoSitePlusQ9UQB3
Domaine pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo    Plakophilin/d_Catenin   
Domain families : Pfam (Sanger)Arm (PF00514)   
Domain families : Pfam (NCBI)pfam00514   
Domain families : Smart (EMBL)ARM (SM00185)  
DMDM Disease mutations1501
Blocks (Seattle)CTNND2
SuperfamilyQ9UQB3
Human Protein AtlasENSG00000169862
Peptide AtlasQ9UQB3
HPRD09181
IPIIPI00301317   IPI00220032   IPI01013107   IPI00967462   IPI00968264   IPI00890767   IPI00964405   IPI00966793   IPI00967771   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQB3
IntAct (EBI)Q9UQB3
FunCoupENSG00000169862
BioGRIDCTNND2
STRING (EMBL)CTNND2
ZODIACCTNND2
Ontologies - Pathways
QuickGOQ9UQB3
Ontology : AmiGOprotein binding  nucleus  cytoplasm  adherens junction  transcription, DNA-templated  regulation of transcription, DNA-templated  cell adhesion  signal transduction  beta-catenin binding  postsynaptic density  Wnt signaling pathway  single organismal cell-cell adhesion  dendrite  perikaryon  synapse organization  regulation of canonical Wnt signaling pathway  dendritic spine morphogenesis  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  adherens junction  transcription, DNA-templated  regulation of transcription, DNA-templated  cell adhesion  signal transduction  beta-catenin binding  postsynaptic density  Wnt signaling pathway  single organismal cell-cell adhesion  dendrite  perikaryon  synapse organization  regulation of canonical Wnt signaling pathway  dendritic spine morphogenesis  
NDEx NetworkCTNND2
Atlas of Cancer Signalling NetworkCTNND2
Wikipedia pathwaysCTNND2
Orthology - Evolution
OrthoDB1501
GeneTree (enSembl)ENSG00000169862
Phylogenetic Trees/Animal Genes : TreeFamCTNND2
Homologs : HomoloGeneCTNND2
Homology/Alignments : Family Browser (UCSC)CTNND2
Gene fusions - Rearrangements
Fusion: TCGACTNND2 5p15.2 P4HA2 5q31.1 BRCA
Fusion: TCGAFAS 10q23.31 CTNND2 5p15.2 BRCA
Fusion: TCGAMTF2 1p22.1 CTNND2 5p15.2 LUSC
Polymorphisms : SNP, variants
NCBI Variation ViewerCTNND2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTNND2
dbVarCTNND2
ClinVarCTNND2
1000_GenomesCTNND2 
Exome Variant ServerCTNND2
ExAC (Exome Aggregation Consortium)CTNND2 (select the gene name)
Genetic variants : HAPMAP1501
Genomic Variants (DGV)CTNND2 [DGVbeta]
Mutations
ICGC Data PortalCTNND2 
TCGA Data PortalCTNND2 
Broad Tumor PortalCTNND2
OASIS PortalCTNND2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTNND2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTNND2
DgiDB (Drug Gene Interaction Database)CTNND2
DoCM (Curated mutations)CTNND2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTNND2 (select a term)
intoGenCTNND2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:10971954-11589029  ENSG00000169862
CONAN: Copy Number AnalysisCTNND2 
Mutations and Diseases : HGMDCTNND2
OMIM604275   
MedgenCTNND2
Genetic Testing Registry CTNND2
NextProtQ9UQB3 [Medical]
TSGene1501
GENETestsCTNND2
Huge Navigator CTNND2 [HugePedia]
snp3D : Map Gene to Disease1501
BioCentury BCIQCTNND2
ClinGenCTNND2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1501
Chemical/Pharm GKB GenePA27017
Clinical trialCTNND2
Miscellaneous
canSAR (ICR)CTNND2 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTNND2
EVEXCTNND2
GoPubMedCTNND2
iHOPCTNND2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:44:38 CEST 2016

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