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CTR9 (CTR9 homolog, Paf1/RNA polymerase II complex component)

Identity

Alias_namesSH2BP1
SH2 domain binding protein 1 (tetratricopeptide repeat containing)
Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
Alias_symbol (synonym)KIAA0155
TSBP
p150TSP
Other aliasp150
HGNC (Hugo) CTR9
LocusID (NCBI) 9646
Atlas_Id 55370
Location 11p15.3  [Link to chromosome band 11p15]
Location_base_pair Starts at 10772534 and ends at 10801302 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CTR9 (11p15.3) / ATG4C (1p31.3)CTR9 (11p15.3) / TAOK3 (12q24.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTR9   16850
Cards
Entrez_Gene (NCBI)CTR9  9646  CTR9 homolog, Paf1/RNA polymerase II complex component
AliasesSH2BP1; TSBP; p150; p150TSP
GeneCards (Weizmann)CTR9
Ensembl hg19 (Hinxton)ENSG00000198730 [Gene_View]  chr11:10772534-10801302 [Contig_View]  CTR9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198730 [Gene_View]  chr11:10772534-10801302 [Contig_View]  CTR9 [Vega]
ICGC DataPortalENSG00000198730
TCGA cBioPortalCTR9
AceView (NCBI)CTR9
Genatlas (Paris)CTR9
WikiGenes9646
SOURCE (Princeton)CTR9
Genetics Home Reference (NIH)CTR9
Genomic and cartography
GoldenPath hg19 (UCSC)CTR9  -     chr11:10772534-10801302 +  11p15.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTR9  -     11p15.3   [Description]    (hg38-Dec_2013)
EnsemblCTR9 - 11p15.3 [CytoView hg19]  CTR9 - 11p15.3 [CytoView hg38]
Mapping of homologs : NCBICTR9 [Mapview hg19]  CTR9 [Mapview hg38]
OMIM609366   
Gene and transcription
Genbank (Entrez)AK291794 BC014335 BC058914 BP223102 BP250198
RefSeq transcript (Entrez)NM_014633
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)CTR9
Cluster EST : UnigeneHs.725151 [ NCBI ]
CGAP (NCI)Hs.725151
Alternative Splicing GalleryENSG00000198730
Gene ExpressionCTR9 [ NCBI-GEO ]   CTR9 [ EBI - ARRAY_EXPRESS ]   CTR9 [ SEEK ]   CTR9 [ MEM ]
Gene Expression Viewer (FireBrowse)CTR9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9646
GTEX Portal (Tissue expression)CTR9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PD62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PD62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PD62
Splice isoforms : SwissVarQ6PD62
PhosPhoSitePlusQ6PD62
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Ctr9    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)    TPR_11 (PF13414)    TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam00515    pfam13414    pfam07719   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)CTR9
DMDM Disease mutations9646
Blocks (Seattle)CTR9
SuperfamilyQ6PD62
Human Protein AtlasENSG00000198730
Peptide AtlasQ6PD62
HPRD06717
IPIIPI00477468   IPI00975493   
Protein Interaction databases
DIP (DOE-UCLA)Q6PD62
IntAct (EBI)Q6PD62
FunCoupENSG00000198730
BioGRIDCTR9
STRING (EMBL)CTR9
ZODIACCTR9
Ontologies - Pathways
QuickGOQ6PD62
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core binding  endodermal cell fate commitment  inner cell mass cell differentiation  trophectodermal cell differentiation  blastocyst growth  protein binding  transcription, DNA-templated  JAK-STAT cascade  histone monoubiquitination  Wnt signaling pathway  Cdc73/Paf1 complex  nuclear speck  stem cell population maintenance  positive regulation of transcription elongation from RNA polymerase II promoter  histone H2B ubiquitination  transcriptionally active chromatin  SH2 domain binding  negative regulation of myeloid cell differentiation  positive regulation of transcription from RNA polymerase II promoter  positive regulation of histone H3-K4 methylation  interleukin-6-mediated signaling pathway  cellular response to lipopolysaccharide  histone H3-K4 trimethylation  negative regulation of mRNA polyadenylation  regulation of genetic imprinting  positive regulation of histone H3-K79 methylation  positive regulation of histone H2B ubiquitination  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core binding  endodermal cell fate commitment  inner cell mass cell differentiation  trophectodermal cell differentiation  blastocyst growth  protein binding  transcription, DNA-templated  JAK-STAT cascade  histone monoubiquitination  Wnt signaling pathway  Cdc73/Paf1 complex  nuclear speck  stem cell population maintenance  positive regulation of transcription elongation from RNA polymerase II promoter  histone H2B ubiquitination  transcriptionally active chromatin  SH2 domain binding  negative regulation of myeloid cell differentiation  positive regulation of transcription from RNA polymerase II promoter  positive regulation of histone H3-K4 methylation  interleukin-6-mediated signaling pathway  cellular response to lipopolysaccharide  histone H3-K4 trimethylation  negative regulation of mRNA polyadenylation  regulation of genetic imprinting  positive regulation of histone H3-K79 methylation  positive regulation of histone H2B ubiquitination  
NDEx NetworkCTR9
Atlas of Cancer Signalling NetworkCTR9
Wikipedia pathwaysCTR9
Orthology - Evolution
OrthoDB9646
GeneTree (enSembl)ENSG00000198730
Phylogenetic Trees/Animal Genes : TreeFamCTR9
HOVERGENQ6PD62
HOGENOMQ6PD62
Homologs : HomoloGeneCTR9
Homology/Alignments : Family Browser (UCSC)CTR9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTR9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTR9
dbVarCTR9
ClinVarCTR9
1000_GenomesCTR9 
Exome Variant ServerCTR9
ExAC (Exome Aggregation Consortium)CTR9 (select the gene name)
Genetic variants : HAPMAP9646
Genomic Variants (DGV)CTR9 [DGVbeta]
DECIPHER (Syndromes)11:10772534-10801302  ENSG00000198730
CONAN: Copy Number AnalysisCTR9 
Mutations
ICGC Data PortalCTR9 
TCGA Data PortalCTR9 
Broad Tumor PortalCTR9
OASIS PortalCTR9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTR9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTR9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTR9
DgiDB (Drug Gene Interaction Database)CTR9
DoCM (Curated mutations)CTR9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTR9 (select a term)
intoGenCTR9
Cancer3DCTR9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609366   
Orphanet
MedgenCTR9
Genetic Testing Registry CTR9
NextProtQ6PD62 [Medical]
TSGene9646
GENETestsCTR9
Huge Navigator CTR9 [HugePedia]
snp3D : Map Gene to Disease9646
BioCentury BCIQCTR9
ClinGenCTR9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9646
Chemical/Pharm GKB GenePA134896774
Clinical trialCTR9
Miscellaneous
canSAR (ICR)CTR9 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTR9
EVEXCTR9
GoPubMedCTR9
iHOPCTR9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:02:12 CET 2017

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