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CTRC (chymotrypsin C (caldecrin))

Identity

Other namesCLCR
ELA4
HGNC (Hugo) CTRC
LocusID (NCBI) 11330
Location 1p36.21
Location_base_pair Starts at 15764938 and ends at 15773153 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CTRC   2523
Cards
Entrez_Gene (NCBI)CTRC  11330  chymotrypsin C (caldecrin)
GeneCards (Weizmann)CTRC
Ensembl (Hinxton)ENSG00000162438 [Gene_View]  chr1:15764938-15773153 [Contig_View]  CTRC [Vega]
ICGC DataPortalENSG00000162438
cBioPortalCTRC
AceView (NCBI)CTRC
Genatlas (Paris)CTRC
WikiGenes11330
SOURCE (Princeton)NM_007272
Genomic and cartography
GoldenPath (UCSC)CTRC  -  1p36.21   chr1:15764938-15773153 +  1p36.21   [Description]    (hg19-Feb_2009)
EnsemblCTRC - 1p36.21 [CytoView]
Mapping of homologs : NCBICTRC [Mapview]
OMIM167800   601405   
Gene and transcription
Genbank (Entrez)AK289447 BC015118 BC059779 CR749296 S82198
RefSeq transcript (Entrez)NM_007272
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_009253 NT_004610 NW_001838564 NW_004929289
Consensus coding sequences : CCDS (NCBI)CTRC
Cluster EST : UnigeneHs.631869 [ NCBI ]
CGAP (NCI)Hs.631869
Alternative Splicing : Fast-db (Paris)GSHG0000160
Alternative Splicing GalleryENSG00000162438
Gene ExpressionCTRC [ NCBI-GEO ]     CTRC [ SEEK ]   CTRC [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99895 (Uniprot)
NextProtQ99895  [Medical]
With graphics : InterProQ99895
Splice isoforms : SwissVarQ99895 (Swissvar)
Catalytic activity : Enzyme3.4.21.2 [ Enzyme-Expasy ]   3.4.21.23.4.21.2 [ IntEnz-EBI ]   3.4.21.2 [ BRENDA ]   3.4.21.2 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Peptidase_S1 [organisation]   Peptidase_S1_AS [organisation]   Peptidase_S1A [organisation]   Trypsin-like_Pept_dom [organisation]  
Related proteins : CluSTrQ99895
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
DMDM Disease mutations11330
Blocks (Seattle)Q99895
PDB (SRS)4H4F   
PDB (PDBSum)4H4F   
PDB (IMB)4H4F   
PDB (RSDB)4H4F   
Human Protein AtlasENSG00000162438 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ99895
HPRD03242
IPIIPI00018553   IPI00470929   
Protein Interaction databases
DIP (DOE-UCLA)Q99895
IntAct (EBI)Q99895
FunCoupENSG00000162438
BioGRIDCTRC
InParanoidQ99895
Interologous Interaction database Q99895
IntegromeDBCTRC
STRING (EMBL)CTRC
Ontologies - Pathways
Ontology : AmiGOserine-type endopeptidase activity  proteolysis  peptidase activity  
Ontology : EGO-EBIserine-type endopeptidase activity  proteolysis  peptidase activity  
Protein Interaction DatabaseCTRC
Wikipedia pathwaysCTRC
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CTRC
snp3D : Map Gene to Disease11330
SNP (GeneSNP Utah)CTRC
SNP : HGBaseCTRC
Genetic variants : HAPMAPCTRC
Exome VariantCTRC
1000_GenomesCTRC 
ICGC programENSG00000162438 
Somatic Mutations in Cancer : COSMICCTRC 
CONAN: Copy Number AnalysisCTRC 
Mutations and Diseases : HGMDCTRC
Genomic VariantsCTRC  CTRC [DGVbeta]
dbVarCTRC
ClinVarCTRC
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM167800    601405   
MedgenCTRC
GENETestsCTRC
Disease Genetic AssociationCTRC
Huge Navigator CTRC [HugePedia]  CTRC [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCTRC
Homology/Alignments : Family Browser (UCSC)CTRC
Phylogenetic Trees/Animal Genes : TreeFamCTRC
Chemical/Protein Interactions : CTD11330
Chemical/Pharm GKB GenePA27024
Clinical trialCTRC
Cancer Resource (Charite)ENSG00000162438
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
CoreMineCTRC
iHOPCTRC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 16:51:48 CEST 2014

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