Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CTRC (chymotrypsin C (caldecrin))

Identity

Other namesCLCR
ELA4
HGNC (Hugo) CTRC
LocusID (NCBI) 11330
Location 1p36.21
Location_base_pair Starts at 15764938 and ends at 15773153 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CTRC   2523
Cards
Entrez_Gene (NCBI)CTRC  11330  chymotrypsin C (caldecrin)
GeneCards (Weizmann)CTRC
Ensembl hg19 (Hinxton)ENSG00000162438 [Gene_View]  chr1:15764938-15773153 [Contig_View]  CTRC [Vega]
Ensembl hg38 (Hinxton)ENSG00000162438 [Gene_View]  chr1:15764938-15773153 [Contig_View]  CTRC [Vega]
ICGC DataPortalENSG00000162438
cBioPortalCTRC
AceView (NCBI)CTRC
Genatlas (Paris)CTRC
WikiGenes11330
SOURCE (Princeton)CTRC
Genomic and cartography
GoldenPath hg19 (UCSC)CTRC  -     chr1:15764938-15773153 +  1p36.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTRC  -     1p36.21   [Description]    (hg38-Dec_2013)
EnsemblCTRC - 1p36.21 [CytoView hg19]  CTRC - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBICTRC [Mapview hg19]  CTRC [Mapview hg38]
OMIM167800   601405   
Gene and transcription
Genbank (Entrez)AK289447 BC015118 BC059779 CR749296 S82198
RefSeq transcript (Entrez)NM_007272
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_009253 NT_032977 NW_001838564 NW_004929289
Consensus coding sequences : CCDS (NCBI)CTRC
Cluster EST : UnigeneHs.631869 [ NCBI ]
CGAP (NCI)Hs.631869
Alternative Splicing : Fast-db (Paris)GSHG0000160
Alternative Splicing GalleryENSG00000162438
Gene ExpressionCTRC [ NCBI-GEO ]     CTRC [ SEEK ]   CTRC [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99895 (Uniprot)
NextProtQ99895  [Medical]
With graphics : InterProQ99895
Splice isoforms : SwissVarQ99895 (Swissvar)
Catalytic activity : Enzyme3.4.21.2 [ Enzyme-Expasy ]   3.4.21.23.4.21.2 [ IntEnz-EBI ]   3.4.21.2 [ BRENDA ]   3.4.21.2 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Peptidase_S1    Peptidase_S1_AS    Peptidase_S1A    Trypsin-like_Pept_dom   
Related proteins : CluSTrQ99895
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
DMDM Disease mutations11330
Blocks (Seattle)Q99895
PDB (SRS)4H4F   
PDB (PDBSum)4H4F   
PDB (IMB)4H4F   
PDB (RSDB)4H4F   
Human Protein AtlasENSG00000162438
Peptide AtlasQ99895
HPRD03242
IPIIPI00018553   IPI00470929   
Protein Interaction databases
DIP (DOE-UCLA)Q99895
IntAct (EBI)Q99895
FunCoupENSG00000162438
BioGRIDCTRC
IntegromeDBCTRC
STRING (EMBL)CTRC
Ontologies - Pathways
QuickGOQ99895
Ontology : AmiGOserine-type endopeptidase activity  proteolysis  peptidase activity  
Ontology : EGO-EBIserine-type endopeptidase activity  proteolysis  peptidase activity  
Protein Interaction DatabaseCTRC
DoCM (Curated mutations)CTRC
Wikipedia pathwaysCTRC
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCTRC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTRC
dbVarCTRC
ClinVarCTRC
1000_GenomesCTRC 
Exome Variant ServerCTRC
SNP (GeneSNP Utah)CTRC
SNP : HGBaseCTRC
Genetic variants : HAPMAPCTRC
Genomic VariantsCTRC  CTRC [DGVbeta]
Mutations
ICGC Data PortalENSG00000162438 
Somatic Mutations in Cancer : COSMICCTRC 
CONAN: Copy Number AnalysisCTRC 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:15764938-15773153
Mutations and Diseases : HGMDCTRC
OMIM167800    601405   
MedgenCTRC
NextProtQ99895 [Medical]
GENETestsCTRC
Disease Genetic AssociationCTRC
Huge Navigator CTRC [HugePedia]  CTRC [HugeCancerGEM]
snp3D : Map Gene to Disease11330
DGIdb (Drug Gene Interaction db)CTRC
General knowledge
Homologs : HomoloGeneCTRC
Homology/Alignments : Family Browser (UCSC)CTRC
Phylogenetic Trees/Animal Genes : TreeFamCTRC
Chemical/Protein Interactions : CTD11330
Chemical/Pharm GKB GenePA27024
Clinical trialCTRC
Cancer Resource (Charite)ENSG00000162438
Other databases
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
CoreMineCTRC
GoPubMedCTRC
iHOPCTRC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 21:03:30 CET 2014

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