Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CTRC (chymotrypsin C)

Identity

Other namesCLCR
ELA4
HGNC (Hugo) CTRC
LocusID (NCBI) 11330
Atlas_Id 40201
Location 1p36.21
Location_base_pair Starts at 15764938 and ends at 15773153 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CTRC (1p36.21) / GABBR1 (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTRC   2523
Cards
Entrez_Gene (NCBI)CTRC  11330  chymotrypsin C
AliasesCLCR; ELA4
GeneCards (Weizmann)CTRC
Ensembl hg19 (Hinxton)ENSG00000162438 [Gene_View]  chr1:15764938-15773153 [Contig_View]  CTRC [Vega]
Ensembl hg38 (Hinxton)ENSG00000162438 [Gene_View]  chr1:15764938-15773153 [Contig_View]  CTRC [Vega]
ICGC DataPortalENSG00000162438
TCGA cBioPortalCTRC
AceView (NCBI)CTRC
Genatlas (Paris)CTRC
WikiGenes11330
SOURCE (Princeton)CTRC
Genomic and cartography
GoldenPath hg19 (UCSC)CTRC  -     chr1:15764938-15773153 +  1p36.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTRC  -     1p36.21   [Description]    (hg38-Dec_2013)
EnsemblCTRC - 1p36.21 [CytoView hg19]  CTRC - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBICTRC [Mapview hg19]  CTRC [Mapview hg38]
OMIM167800   601405   
Gene and transcription
Genbank (Entrez)AK289447 BC015118 BC059779 CR749296 S82198
RefSeq transcript (Entrez)NM_007272
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_009253 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)CTRC
Cluster EST : UnigeneHs.631869 [ NCBI ]
CGAP (NCI)Hs.631869
Alternative Splicing GalleryENSG00000162438
Gene ExpressionCTRC [ NCBI-GEO ]   CTRC [ EBI - ARRAY_EXPRESS ]   CTRC [ SEEK ]   CTRC [ MEM ]
Gene Expression Viewer (FireBrowse)CTRC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11330
GTEX Portal (Tissue expression)CTRC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99895 (Uniprot)
NextProtQ99895  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99895
Splice isoforms : SwissVarQ99895 (Swissvar)
Catalytic activity : Enzyme3.4.21.2 [ Enzyme-Expasy ]   3.4.21.23.4.21.2 [ IntEnz-EBI ]   3.4.21.2 [ BRENDA ]   3.4.21.2 [ KEGG ]   
PhosPhoSitePlusQ99895
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Peptidase_S1_PA    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
DMDM Disease mutations11330
Blocks (Seattle)CTRC
PDB (SRS)4H4F   
PDB (PDBSum)4H4F   
PDB (IMB)4H4F   
PDB (RSDB)4H4F   
Structural Biology KnowledgeBase4H4F   
SCOP (Structural Classification of Proteins)4H4F   
CATH (Classification of proteins structures)4H4F   
SuperfamilyQ99895
Human Protein AtlasENSG00000162438
Peptide AtlasQ99895
HPRD03242
IPIIPI00018553   IPI00470929   
Protein Interaction databases
DIP (DOE-UCLA)Q99895
IntAct (EBI)Q99895
FunCoupENSG00000162438
BioGRIDCTRC
STRING (EMBL)CTRC
ZODIACCTRC
Ontologies - Pathways
QuickGOQ99895
Ontology : AmiGOserine-type endopeptidase activity  protein binding  extracellular region  proteolysis  peptidase activity  cobalamin metabolic process  
Ontology : EGO-EBIserine-type endopeptidase activity  protein binding  extracellular region  proteolysis  peptidase activity  cobalamin metabolic process  
NDEx Network
Atlas of Cancer Signalling NetworkCTRC
Wikipedia pathwaysCTRC
Orthology - Evolution
OrthoDB11330
GeneTree (enSembl)ENSG00000162438
Phylogenetic Trees/Animal Genes : TreeFamCTRC
Homologs : HomoloGeneCTRC
Homology/Alignments : Family Browser (UCSC)CTRC
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCTRC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTRC
dbVarCTRC
ClinVarCTRC
1000_GenomesCTRC 
Exome Variant ServerCTRC
ExAC (Exome Aggregation Consortium)CTRC (select the gene name)
Genetic variants : HAPMAP11330
Genomic Variants (DGV)CTRC [DGVbeta]
Mutations
ICGC Data PortalCTRC 
TCGA Data PortalCTRC 
Broad Tumor PortalCTRC
OASIS PortalCTRC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTRC 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTRC
DgiDB (Drug Gene Interaction Database)CTRC
DoCM (Curated mutations)CTRC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTRC (select a term)
intoGenCTRC
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:15764938-15773153  ENSG00000162438
CONAN: Copy Number AnalysisCTRC 
Mutations and Diseases : HGMDCTRC
OMIM167800    601405   
MedgenCTRC
Genetic Testing Registry CTRC
NextProtQ99895 [Medical]
TSGene11330
GENETestsCTRC
Huge Navigator CTRC [HugePedia]
snp3D : Map Gene to Disease11330
BioCentury BCIQCTRC
ClinGenCTRC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11330
Chemical/Pharm GKB GenePA27024
Clinical trialCTRC
Miscellaneous
canSAR (ICR)CTRC (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTRC
EVEXCTRC
GoPubMedCTRC
iHOPCTRC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat May 28 10:59:22 CEST 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.