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CTRL (chymotrypsin like)

Identity

Alias_nameschymotrypsin-like
Other aliasCTRL1
HGNC (Hugo) CTRL
LocusID (NCBI) 1506
Atlas_Id 62189
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67929570 and ends at 67931875 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTRL (16q22.1) / CTRL (16q22.1)LMF2 (22q13.33) / CTRL (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTRL   2524
Cards
Entrez_Gene (NCBI)CTRL  1506  chymotrypsin like
AliasesCTRL1
GeneCards (Weizmann)CTRL
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:67929570-67931875 [Contig_View]  CTRL [Vega]
TCGA cBioPortalCTRL
AceView (NCBI)CTRL
Genatlas (Paris)CTRL
WikiGenes1506
SOURCE (Princeton)CTRL
Genetics Home Reference (NIH)CTRL
Genomic and cartography
GoldenPath hg38 (UCSC)CTRL  -     chr16:67929570-67931875 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTRL  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblCTRL - 16q22.1 [CytoView hg19]  CTRL - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICTRL [Mapview hg19]  CTRL [Mapview hg38]
OMIM118888   
Gene and transcription
Genbank (Entrez)AK223172 BC039716 BC063475 HQ448083 X71877
RefSeq transcript (Entrez)NM_001907
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTRL
Cluster EST : UnigeneHs.654546 [ NCBI ]
CGAP (NCI)Hs.654546
Gene ExpressionCTRL [ NCBI-GEO ]   CTRL [ EBI - ARRAY_EXPRESS ]   CTRL [ SEEK ]   CTRL [ MEM ]
Gene Expression Viewer (FireBrowse)CTRL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1506
GTEX Portal (Tissue expression)CTRL
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40313   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40313  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40313
Splice isoforms : SwissVarP40313
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusP40313
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Peptidase_S1_PA    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)CTRL
DMDM Disease mutations1506
Blocks (Seattle)CTRL
SuperfamilyP40313
Peptide AtlasP40313
HPRD00344
IPIIPI00643847   IPI00027947   
Protein Interaction databases
DIP (DOE-UCLA)P40313
IntAct (EBI)P40313
BioGRIDCTRL
STRING (EMBL)CTRL
ZODIACCTRL
Ontologies - Pathways
QuickGOP40313
Ontology : AmiGOserine-type endopeptidase activity  extracellular space  proteolysis  digestion  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular space  proteolysis  digestion  
Pathways : KEGGPancreatic secretion    Protein digestion and absorption   
NDEx NetworkCTRL
Atlas of Cancer Signalling NetworkCTRL
Wikipedia pathwaysCTRL
Orthology - Evolution
OrthoDB1506
Phylogenetic Trees/Animal Genes : TreeFamCTRL
HOVERGENP40313
HOGENOMP40313
Homologs : HomoloGeneCTRL
Homology/Alignments : Family Browser (UCSC)CTRL
Gene fusions - Rearrangements
Tumor Fusion PortalCTRL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTRL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTRL
dbVarCTRL
ClinVarCTRL
1000_GenomesCTRL 
Exome Variant ServerCTRL
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP1506
Genomic Variants (DGV)CTRL [DGVbeta]
DECIPHERCTRL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTRL 
Mutations
ICGC Data PortalCTRL 
TCGA Data PortalCTRL 
Broad Tumor PortalCTRL
OASIS PortalCTRL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTRL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTRL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTRL
DgiDB (Drug Gene Interaction Database)CTRL
DoCM (Curated mutations)CTRL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTRL (select a term)
intoGenCTRL
Cancer3DCTRL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM118888   
Orphanet
DisGeNETCTRL
MedgenCTRL
Genetic Testing Registry CTRL
NextProtP40313 [Medical]
TSGene1506
GENETestsCTRL
Target ValidationCTRL
Huge Navigator CTRL [HugePedia]
snp3D : Map Gene to Disease1506
BioCentury BCIQCTRL
ClinGenCTRL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1506
Chemical/Pharm GKB GenePA27025
Clinical trialCTRL
Miscellaneous
canSAR (ICR)CTRL (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTRL
EVEXCTRL
GoPubMedCTRL
iHOPCTRL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:07 CET 2017

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