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CTSE (cathepsin E)

Identity

Other aliasCATE
HGNC (Hugo) CTSE
LocusID (NCBI) 1510
Atlas_Id 40204
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 206009264 and ends at 206023909 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTSE   2530
Cards
Entrez_Gene (NCBI)CTSE  1510  cathepsin E
AliasesCATE
GeneCards (Weizmann)CTSE
Ensembl hg19 (Hinxton)ENSG00000196188 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196188 [Gene_View]  chr1:206009264-206023909 [Contig_View]  CTSE [Vega]
ICGC DataPortalENSG00000196188
TCGA cBioPortalCTSE
AceView (NCBI)CTSE
Genatlas (Paris)CTSE
WikiGenes1510
SOURCE (Princeton)CTSE
Genetics Home Reference (NIH)CTSE
Genomic and cartography
GoldenPath hg38 (UCSC)CTSE  -     chr1:206009264-206023909 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTSE  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblCTSE - 1q32.1 [CytoView hg19]  CTSE - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBICTSE [Mapview hg19]  CTSE [Mapview hg38]
OMIM116890   
Gene and transcription
Genbank (Entrez)AJ250716 AJ250717 AK292057 AK298069 AU100136
RefSeq transcript (Entrez)NM_001317331 NM_001910 NM_148964
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTSE
Cluster EST : UnigeneHs.644082 [ NCBI ]
CGAP (NCI)Hs.644082
Alternative Splicing GalleryENSG00000196188
Gene ExpressionCTSE [ NCBI-GEO ]   CTSE [ EBI - ARRAY_EXPRESS ]   CTSE [ SEEK ]   CTSE [ MEM ]
Gene Expression Viewer (FireBrowse)CTSE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1510
GTEX Portal (Tissue expression)CTSE
Human Protein AtlasENSG00000196188-CTSE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP14091   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP14091  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP14091
Splice isoforms : SwissVarP14091
Catalytic activity : Enzyme3.4.23.34 [ Enzyme-Expasy ]   3.4.23.343.4.23.34 [ IntEnz-EBI ]   3.4.23.34 [ BRENDA ]   3.4.23.34 [ KEGG ]   
PhosPhoSitePlusP14091
Domaine pattern : Prosite (Expaxy)ASP_PROTEASE (PS00141)    PEPTIDASE_A1 (PS51767)   
Domains : Interpro (EBI)Aspartic_peptidase_A1    Aspartic_peptidase_AS    Aspartic_peptidase_N    Cathepsin_E    PEPTIDASE_A1    Peptidase_aspartic_dom   
Domain families : Pfam (Sanger)A1_Propeptide (PF07966)    Asp (PF00026)   
Domain families : Pfam (NCBI)pfam07966    pfam00026   
Conserved Domain (NCBI)CTSE
DMDM Disease mutations1510
Blocks (Seattle)CTSE
PDB (SRS)1LCG    1TZS   
PDB (PDBSum)1LCG    1TZS   
PDB (IMB)1LCG    1TZS   
PDB (RSDB)1LCG    1TZS   
Structural Biology KnowledgeBase1LCG    1TZS   
SCOP (Structural Classification of Proteins)1LCG    1TZS   
CATH (Classification of proteins structures)1LCG    1TZS   
SuperfamilyP14091
Human Protein Atlas [tissue]ENSG00000196188-CTSE [tissue]
Peptide AtlasP14091
HPRD00294
IPIIPI00025062   IPI00020716   IPI00409646   IPI00941078   
Protein Interaction databases
DIP (DOE-UCLA)P14091
IntAct (EBI)P14091
FunCoupENSG00000196188
BioGRIDCTSE
STRING (EMBL)CTSE
ZODIACCTSE
Ontologies - Pathways
QuickGOP14091
Ontology : AmiGOaspartic-type endopeptidase activity  endosome  digestion  protein autoprocessing  antigen processing and presentation of exogenous peptide antigen via MHC class II  protein catabolic process  protein homodimerization activity  extracellular exosome  
Ontology : EGO-EBIaspartic-type endopeptidase activity  endosome  digestion  protein autoprocessing  antigen processing and presentation of exogenous peptide antigen via MHC class II  protein catabolic process  protein homodimerization activity  extracellular exosome  
Pathways : KEGGLysosome   
NDEx NetworkCTSE
Atlas of Cancer Signalling NetworkCTSE
Wikipedia pathwaysCTSE
Orthology - Evolution
OrthoDB1510
GeneTree (enSembl)ENSG00000196188
Phylogenetic Trees/Animal Genes : TreeFamCTSE
HOVERGENP14091
HOGENOMP14091
Homologs : HomoloGeneCTSE
Homology/Alignments : Family Browser (UCSC)CTSE
Gene fusions - Rearrangements
Fusion: Tumor Portal CTSE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTSE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTSE
dbVarCTSE
ClinVarCTSE
1000_GenomesCTSE 
Exome Variant ServerCTSE
ExAC (Exome Aggregation Consortium)ENSG00000196188
GNOMAD BrowserENSG00000196188
Genetic variants : HAPMAP1510
Genomic Variants (DGV)CTSE [DGVbeta]
DECIPHERCTSE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTSE 
Mutations
ICGC Data PortalCTSE 
TCGA Data PortalCTSE 
Broad Tumor PortalCTSE
OASIS PortalCTSE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTSE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTSE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTSE
DgiDB (Drug Gene Interaction Database)CTSE
DoCM (Curated mutations)CTSE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTSE (select a term)
intoGenCTSE
Cancer3DCTSE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM116890   
Orphanet
MedgenCTSE
Genetic Testing Registry CTSE
NextProtP14091 [Medical]
TSGene1510
GENETestsCTSE
Target ValidationCTSE
Huge Navigator CTSE [HugePedia]
snp3D : Map Gene to Disease1510
BioCentury BCIQCTSE
ClinGenCTSE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1510
Chemical/Pharm GKB GenePA27030
Clinical trialCTSE
Miscellaneous
canSAR (ICR)CTSE (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTSE
EVEXCTSE
GoPubMedCTSE
iHOPCTSE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:46:23 CET 2017

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