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CTSF (cathepsin F)

Identity

Other namesCATSF
CLN13
HGNC (Hugo) CTSF
LocusID (NCBI) 8722
Atlas_Id 45683
Location 11q13.2
Location_base_pair Starts at 66330935 and ends at 66336047 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTSF   2531
Cards
Entrez_Gene (NCBI)CTSF  8722  cathepsin F
GeneCards (Weizmann)CTSF
Ensembl hg19 (Hinxton)ENSG00000174080 [Gene_View]  chr11:66330935-66336047 [Contig_View]  CTSF [Vega]
Ensembl hg38 (Hinxton)ENSG00000174080 [Gene_View]  chr11:66330935-66336047 [Contig_View]  CTSF [Vega]
ICGC DataPortalENSG00000174080
TCGA cBioPortalCTSF
AceView (NCBI)CTSF
Genatlas (Paris)CTSF
WikiGenes8722
SOURCE (Princeton)CTSF
Genomic and cartography
GoldenPath hg19 (UCSC)CTSF  -     chr11:66330935-66336047 -  11q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTSF  -     11q13.2   [Description]    (hg38-Dec_2013)
EnsemblCTSF - 11q13.2 [CytoView hg19]  CTSF - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBICTSF [Mapview hg19]  CTSF [Mapview hg38]
OMIM603539   615362   
Gene and transcription
Genbank (Entrez)AF071748 AF071749 AF088886 AF136279 AJ007331
RefSeq transcript (Entrez)NM_003793
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_032973 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)CTSF
Cluster EST : UnigeneHs.11590 [ NCBI ]
CGAP (NCI)Hs.11590
Alternative Splicing : Fast-db (Paris)GSHG0005930
Alternative Splicing GalleryENSG00000174080
Gene ExpressionCTSF [ NCBI-GEO ]     CTSF [ SEEK ]   CTSF [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)8722
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBX1 (Uniprot)
NextProtQ9UBX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBX1
Splice isoforms : SwissVarQ9UBX1 (Swissvar)
Catalytic activity : Enzyme3.4.22.41 [ Enzyme-Expasy ]   3.4.22.41 [ Enzyme-SRS ]   3.4.22.41 [ IntEnz-EBI ]   3.4.22.41 [ PRIAM ]   3.4.22.41 [ BRENDA ]   3.4.22.41 [ KEGG ]   3.4.22.41 [ IUBMB ]
PhosPhoSitePlusQ9UBX1
Domaine pattern : Prosite (Expaxy)THIOL_PROTEASE_CYS (PS00139)    THIOL_PROTEASE_HIS (PS00639)   
Domains : Interpro (EBI)Pept_cys_AS    Pept_his_AS    Peptidase_C1A    Peptidase_C1A_C    Prot_inhib_I29   
Domain families : Pfam (Sanger)Inhibitor_I29 (PF08246)    Peptidase_C1 (PF00112)   
Domain families : Pfam (NCBI)pfam08246    pfam00112   
Domain families : Smart (EMBL)Inhibitor_I29 (SM00848)  Pept_C1 (SM00645)  
DMDM Disease mutations8722
Blocks (Seattle)CTSF
PDB (SRS)1D5U    1M6D   
PDB (PDBSum)1D5U    1M6D   
PDB (IMB)1D5U    1M6D   
PDB (RSDB)1D5U    1M6D   
Structural Biology KnowledgeBase1D5U    1M6D   
SCOP (Structural Classification of Proteins)1D5U    1M6D   
CATH (Classification of proteins structures)1D5U    1M6D   
Human Protein AtlasENSG00000174080
Peptide AtlasQ9UBX1
HPRD04643
IPIIPI00002816   IPI00977158   IPI00976667   IPI00977836   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBX1
IntAct (EBI)Q9UBX1
FunCoupENSG00000174080
BioGRIDCTSF
IntegromeDBCTSF
STRING (EMBL)CTSF
ZODIACCTSF
Ontologies - Pathways
QuickGOQ9UBX1
Ontology : AmiGOcysteine-type endopeptidase activity  extracellular space  lysosome  proteolysis  antigen processing and presentation of exogenous peptide antigen via MHC class II  lysosomal lumen  proteolysis involved in cellular protein catabolic process  extracellular exosome  extracellular vesicle  
Ontology : EGO-EBIcysteine-type endopeptidase activity  extracellular space  lysosome  proteolysis  antigen processing and presentation of exogenous peptide antigen via MHC class II  lysosomal lumen  proteolysis involved in cellular protein catabolic process  extracellular exosome  extracellular vesicle  
Pathways : KEGGLysosome   
Protein Interaction DatabaseCTSF
Atlas of Cancer Signalling NetworkCTSF
Wikipedia pathwaysCTSF
Orthology - Evolution
OrthoDB8722
GeneTree (enSembl)ENSG00000174080
Phylogenetic Trees/Animal Genes : TreeFamCTSF
Homologs : HomoloGeneCTSF
Homology/Alignments : Family Browser (UCSC)CTSF
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCTSF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTSF
dbVarCTSF
ClinVarCTSF
1000_GenomesCTSF 
Exome Variant ServerCTSF
Exome Aggregation Consortium (ExAC)ENSG00000174080
SNP (GeneSNP Utah)CTSF
SNP : HGBaseCTSF
Genetic variants : HAPMAPCTSF
Genomic Variants (DGV)CTSF [DGVbeta]
Mutations
ICGC Data PortalCTSF 
TCGA Data PortalCTSF 
Tumor PortalCTSF
TCGA Copy Number PortalCTSF
Somatic Mutations in Cancer : COSMICCTSF 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch CTSF
DgiDB (Drug Gene Interaction Database)CTSF
DoCM (Curated mutations)CTSF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTSF (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:66330935-66336047
CONAN: Copy Number AnalysisCTSF 
Mutations and Diseases : HGMDCTSF
OMIM603539    615362   
MedgenCTSF
NextProtQ9UBX1 [Medical]
TSGene8722
GENETestsCTSF
Huge Navigator CTSF [HugePedia]  CTSF [HugeCancerGEM]
snp3D : Map Gene to Disease8722
BioCentury BCIQCTSF
General knowledge
Chemical/Protein Interactions : CTD8722
Chemical/Pharm GKB GenePA27031
Clinical trialCTSF
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTSF
GoPubMedCTSF
iHOPCTSF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:25:24 CET 2016

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