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CTSF (cathepsin F)

Identity

Other namesCATSF
CLN13
HGNC (Hugo) CTSF
LocusID (NCBI) 8722
Location 11q13.2
Location_base_pair Starts at 66330935 and ends at 66336047 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CTSF   2531
Cards
Entrez_Gene (NCBI)CTSF  8722  cathepsin F
GeneCards (Weizmann)CTSF
Ensembl (Hinxton)ENSG00000174080 [Gene_View]  chr11:66330935-66336047 [Contig_View]  CTSF [Vega]
ICGC DataPortalENSG00000174080
cBioPortalCTSF
AceView (NCBI)CTSF
Genatlas (Paris)CTSF
WikiGenes8722
SOURCE (Princeton)NM_003793
Genomic and cartography
GoldenPath (UCSC)CTSF  -  11q13.2   chr11:66330935-66336047 -  11q13.2   [Description]    (hg19-Feb_2009)
EnsemblCTSF - 11q13.2 [CytoView]
Mapping of homologs : NCBICTSF [Mapview]
OMIM603539   615362   
Gene and transcription
Genbank (Entrez)AF071748 AF071749 AF088886 AF136279 AJ007331
RefSeq transcript (Entrez)NM_003793
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_032973 NT_167190 NW_001838025 NW_004929380
Consensus coding sequences : CCDS (NCBI)CTSF
Cluster EST : UnigeneHs.11590 [ NCBI ]
CGAP (NCI)Hs.11590
Alternative Splicing : Fast-db (Paris)GSHG0005930
Alternative Splicing GalleryENSG00000174080
Gene ExpressionCTSF [ NCBI-GEO ]     CTSF [ SEEK ]   CTSF [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBX1 (Uniprot)
NextProtQ9UBX1  [Medical]
With graphics : InterProQ9UBX1
Splice isoforms : SwissVarQ9UBX1 (Swissvar)
Catalytic activity : Enzyme3.4.22.41 [ Enzyme-Expasy ]   3.4.22.413.4.22.41 [ IntEnz-EBI ]   3.4.22.41 [ BRENDA ]   3.4.22.41 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)THIOL_PROTEASE_CYS (PS00139)    THIOL_PROTEASE_HIS (PS00639)   
Domains : Interpro (EBI)Pept_cys_AS [organisation]   Pept_his_AS [organisation]   Peptidase_C1A [organisation]   Peptidase_C1A_C [organisation]   Prot_inhib_I29 [organisation]  
Related proteins : CluSTrQ9UBX1
Domain families : Pfam (Sanger)Inhibitor_I29 (PF08246)    Peptidase_C1 (PF00112)   
Domain families : Pfam (NCBI)pfam08246    pfam00112   
Domain families : Smart (EMBL)Inhibitor_I29 (SM00848)  Pept_C1 (SM00645)  
DMDM Disease mutations8722
Blocks (Seattle)Q9UBX1
PDB (SRS)1D5U    1M6D   
PDB (PDBSum)1D5U    1M6D   
PDB (IMB)1D5U    1M6D   
PDB (RSDB)1D5U    1M6D   
Human Protein AtlasENSG00000174080 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9UBX1
HPRD04643
IPIIPI00002816   IPI00977158   IPI00976667   IPI00977836   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBX1
IntAct (EBI)Q9UBX1
FunCoupENSG00000174080
BioGRIDCTSF
InParanoidQ9UBX1
Interologous Interaction database Q9UBX1
IntegromeDBCTSF
STRING (EMBL)CTSF
Ontologies - Pathways
Ontology : AmiGOcysteine-type endopeptidase activity  lysosome  proteolysis  cell death  antigen processing and presentation of exogenous peptide antigen via MHC class II  lysosomal lumen  extracellular vesicular exosome  
Ontology : EGO-EBIcysteine-type endopeptidase activity  lysosome  proteolysis  cell death  antigen processing and presentation of exogenous peptide antigen via MHC class II  lysosomal lumen  extracellular vesicular exosome  
Pathways : KEGGLysosome   
Protein Interaction DatabaseCTSF
Wikipedia pathwaysCTSF
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CTSF
snp3D : Map Gene to Disease8722
SNP (GeneSNP Utah)CTSF
SNP : HGBaseCTSF
Genetic variants : HAPMAPCTSF
Exome VariantCTSF
1000_GenomesCTSF 
ICGC programENSG00000174080 
Somatic Mutations in Cancer : COSMICCTSF 
CONAN: Copy Number AnalysisCTSF 
Mutations and Diseases : HGMDCTSF
Genomic VariantsCTSF  CTSF [DGVbeta]
dbVarCTSF
ClinVarCTSF
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM603539    615362   
MedgenCTSF
GENETestsCTSF
Disease Genetic AssociationCTSF
Huge Navigator CTSF [HugePedia]  CTSF [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCTSF
Homology/Alignments : Family Browser (UCSC)CTSF
Phylogenetic Trees/Animal Genes : TreeFamCTSF
Chemical/Protein Interactions : CTD8722
Chemical/Pharm GKB GenePA27031
Clinical trialCTSF
Cancer Resource (Charite)ENSG00000174080
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
CoreMineCTSF
iHOPCTSF
OncoSearchCTSF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:28:49 CEST 2014

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