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CTSF (cathepsin F)

Identity

Other namesCATSF
CLN13
HGNC (Hugo) CTSF
LocusID (NCBI) 8722
Atlas_Id 45683
Location 11q13.2
Location_base_pair Starts at 66330935 and ends at 66336047 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CTSF (11q13.2) / CTSF (11q13.2)ZNF251 (8q24.3) / CTSF (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTSF   2531
Cards
Entrez_Gene (NCBI)CTSF  8722  cathepsin F
AliasesCATSF; CLN13
GeneCards (Weizmann)CTSF
Ensembl hg19 (Hinxton)ENSG00000174080 [Gene_View]  chr11:66330935-66336047 [Contig_View]  CTSF [Vega]
Ensembl hg38 (Hinxton)ENSG00000174080 [Gene_View]  chr11:66330935-66336047 [Contig_View]  CTSF [Vega]
ICGC DataPortalENSG00000174080
TCGA cBioPortalCTSF
AceView (NCBI)CTSF
Genatlas (Paris)CTSF
WikiGenes8722
SOURCE (Princeton)CTSF
Genomic and cartography
GoldenPath hg19 (UCSC)CTSF  -     chr11:66330935-66336047 -  11q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTSF  -     11q13.2   [Description]    (hg38-Dec_2013)
EnsemblCTSF - 11q13.2 [CytoView hg19]  CTSF - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBICTSF [Mapview hg19]  CTSF [Mapview hg38]
OMIM603539   615362   
Gene and transcription
Genbank (Entrez)AF071748 AF071749 AF088886 AF136279 AJ007331
RefSeq transcript (Entrez)NM_003793
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_032973 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)CTSF
Cluster EST : UnigeneHs.11590 [ NCBI ]
CGAP (NCI)Hs.11590
Alternative Splicing GalleryENSG00000174080
Gene ExpressionCTSF [ NCBI-GEO ]   CTSF [ EBI - ARRAY_EXPRESS ]   CTSF [ SEEK ]   CTSF [ MEM ]
Gene Expression Viewer (FireBrowse)CTSF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8722
GTEX Portal (Tissue expression)CTSF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBX1 (Uniprot)
NextProtQ9UBX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBX1
Splice isoforms : SwissVarQ9UBX1 (Swissvar)
Catalytic activity : Enzyme3.4.22.41 [ Enzyme-Expasy ]   3.4.22.413.4.22.41 [ IntEnz-EBI ]   3.4.22.41 [ BRENDA ]   3.4.22.41 [ KEGG ]   
PhosPhoSitePlusQ9UBX1
Domaine pattern : Prosite (Expaxy)THIOL_PROTEASE_CYS (PS00139)    THIOL_PROTEASE_HIS (PS00639)   
Domains : Interpro (EBI)Pept_cys_AS    Pept_his_AS    Peptidase_C1A    Peptidase_C1A_C    Prot_inhib_I29   
Domain families : Pfam (Sanger)Inhibitor_I29 (PF08246)    Peptidase_C1 (PF00112)   
Domain families : Pfam (NCBI)pfam08246    pfam00112   
Domain families : Smart (EMBL)Inhibitor_I29 (SM00848)  Pept_C1 (SM00645)  
DMDM Disease mutations8722
Blocks (Seattle)CTSF
PDB (SRS)1D5U    1M6D   
PDB (PDBSum)1D5U    1M6D   
PDB (IMB)1D5U    1M6D   
PDB (RSDB)1D5U    1M6D   
Structural Biology KnowledgeBase1D5U    1M6D   
SCOP (Structural Classification of Proteins)1D5U    1M6D   
CATH (Classification of proteins structures)1D5U    1M6D   
SuperfamilyQ9UBX1
Human Protein AtlasENSG00000174080
Peptide AtlasQ9UBX1
HPRD04643
IPIIPI00002816   IPI00977158   IPI00976667   IPI00977836   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBX1
IntAct (EBI)Q9UBX1
FunCoupENSG00000174080
BioGRIDCTSF
STRING (EMBL)CTSF
ZODIACCTSF
Ontologies - Pathways
QuickGOQ9UBX1
Ontology : AmiGOcysteine-type endopeptidase activity  extracellular space  lysosome  proteolysis  antigen processing and presentation of exogenous peptide antigen via MHC class II  lysosomal lumen  proteolysis involved in cellular protein catabolic process  extracellular exosome  extracellular vesicle  
Ontology : EGO-EBIcysteine-type endopeptidase activity  extracellular space  lysosome  proteolysis  antigen processing and presentation of exogenous peptide antigen via MHC class II  lysosomal lumen  proteolysis involved in cellular protein catabolic process  extracellular exosome  extracellular vesicle  
Pathways : KEGGLysosome   
NDEx Network
Atlas of Cancer Signalling NetworkCTSF
Wikipedia pathwaysCTSF
Orthology - Evolution
OrthoDB8722
GeneTree (enSembl)ENSG00000174080
Phylogenetic Trees/Animal Genes : TreeFamCTSF
Homologs : HomoloGeneCTSF
Homology/Alignments : Family Browser (UCSC)CTSF
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCTSF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTSF
dbVarCTSF
ClinVarCTSF
1000_GenomesCTSF 
Exome Variant ServerCTSF
ExAC (Exome Aggregation Consortium)CTSF (select the gene name)
Genetic variants : HAPMAP8722
Genomic Variants (DGV)CTSF [DGVbeta]
Mutations
ICGC Data PortalCTSF 
TCGA Data PortalCTSF 
Broad Tumor PortalCTSF
OASIS PortalCTSF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTSF 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch CTSF
DgiDB (Drug Gene Interaction Database)CTSF
DoCM (Curated mutations)CTSF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTSF (select a term)
intoGenCTSF
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:66330935-66336047  ENSG00000174080
CONAN: Copy Number AnalysisCTSF 
Mutations and Diseases : HGMDCTSF
OMIM603539    615362   
MedgenCTSF
Genetic Testing Registry CTSF
NextProtQ9UBX1 [Medical]
TSGene8722
GENETestsCTSF
Huge Navigator CTSF [HugePedia]
snp3D : Map Gene to Disease8722
BioCentury BCIQCTSF
ClinGenCTSF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8722
Chemical/Pharm GKB GenePA27031
Clinical trialCTSF
Miscellaneous
canSAR (ICR)CTSF (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTSF
EVEXCTSF
GoPubMedCTSF
iHOPCTSF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 10:59:24 CEST 2016

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