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CTSL3P (cathepsin L family member 3, pseudogene)

Identity

Alias_namesCTSL3
cathepsin L family member 3
Alias_symbol (synonym)HCTSL-s
Other alias
HGNC (Hugo) CTSL3P
LocusID (NCBI) 392360
Atlas_Id 62190
Location 9q21.33  [Link to chromosome band 9q21]
Location_base_pair Starts at 87772915 and ends at 87786884 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTSL3P   33132
Cards
Entrez_Gene (NCBI)CTSL3P  392360  cathepsin L family member 3, pseudogene
AliasesCTSL3; HCTSL-s
GeneCards (Weizmann)CTSL3P
Ensembl hg19 (Hinxton)ENSG00000188029 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188029 [Gene_View]  chr9:87772915-87786884 [Contig_View]  CTSL3P [Vega]
ICGC DataPortalENSG00000188029
TCGA cBioPortalCTSL3P
AceView (NCBI)CTSL3P
Genatlas (Paris)CTSL3P
WikiGenes392360
SOURCE (Princeton)CTSL3P
Genetics Home Reference (NIH)CTSL3P
Genomic and cartography
GoldenPath hg38 (UCSC)CTSL3P  -     chr9:87772915-87786884 +  9q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTSL3P  -     9q21.33   [Description]    (hg19-Feb_2009)
EnsemblCTSL3P - 9q21.33 [CytoView hg19]  CTSL3P - 9q21.33 [CytoView hg38]
Mapping of homologs : NCBICTSL3P [Mapview hg19]  CTSL3P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ851862 BC160188
RefSeq transcript (Entrez)NM_001023564
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTSL3P
Cluster EST : UnigeneHs.690450 [ NCBI ]
CGAP (NCI)Hs.690450
Alternative Splicing GalleryENSG00000188029
Gene ExpressionCTSL3P [ NCBI-GEO ]   CTSL3P [ EBI - ARRAY_EXPRESS ]   CTSL3P [ SEEK ]   CTSL3P [ MEM ]
Gene Expression Viewer (FireBrowse)CTSL3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392360
GTEX Portal (Tissue expression)CTSL3P
Human Protein AtlasENSG00000188029-CTSL3P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5NE16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5NE16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5NE16
Splice isoforms : SwissVarQ5NE16
PhosPhoSitePlusQ5NE16
Domains : Interpro (EBI)Peptidase_C1A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTSL3P
DMDM Disease mutations392360
Blocks (Seattle)CTSL3P
SuperfamilyQ5NE16
Human Protein Atlas [tissue]ENSG00000188029-CTSL3P [tissue]
Peptide AtlasQ5NE16
HPRD18619
IPIIPI00783511   
Protein Interaction databases
DIP (DOE-UCLA)Q5NE16
IntAct (EBI)Q5NE16
FunCoupENSG00000188029
BioGRIDCTSL3P
STRING (EMBL)CTSL3P
ZODIACCTSL3P
Ontologies - Pathways
QuickGOQ5NE16
Ontology : AmiGOproteolysis  cysteine-type peptidase activity  
Ontology : EGO-EBIproteolysis  cysteine-type peptidase activity  
NDEx NetworkCTSL3P
Atlas of Cancer Signalling NetworkCTSL3P
Wikipedia pathwaysCTSL3P
Orthology - Evolution
OrthoDB392360
GeneTree (enSembl)ENSG00000188029
Phylogenetic Trees/Animal Genes : TreeFamCTSL3P
HOVERGENQ5NE16
HOGENOMQ5NE16
Homologs : HomoloGeneCTSL3P
Homology/Alignments : Family Browser (UCSC)CTSL3P
Gene fusions - Rearrangements
Fusion: Tumor Portal CTSL3P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTSL3P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTSL3P
dbVarCTSL3P
ClinVarCTSL3P
1000_GenomesCTSL3P 
Exome Variant ServerCTSL3P
ExAC (Exome Aggregation Consortium)ENSG00000188029
GNOMAD BrowserENSG00000188029
Genetic variants : HAPMAP392360
Genomic Variants (DGV)CTSL3P [DGVbeta]
DECIPHERCTSL3P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTSL3P 
Mutations
ICGC Data PortalCTSL3P 
TCGA Data PortalCTSL3P 
Broad Tumor PortalCTSL3P
OASIS PortalCTSL3P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCTSL3P
BioMutasearch CTSL3P
DgiDB (Drug Gene Interaction Database)CTSL3P
DoCM (Curated mutations)CTSL3P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTSL3P (select a term)
intoGenCTSL3P
Cancer3DCTSL3P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCTSL3P
Genetic Testing Registry CTSL3P
NextProtQ5NE16 [Medical]
TSGene392360
GENETestsCTSL3P
Target ValidationCTSL3P
Huge Navigator CTSL3P [HugePedia]
snp3D : Map Gene to Disease392360
BioCentury BCIQCTSL3P
ClinGenCTSL3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392360
Chemical/Pharm GKB GenePA162382911
Clinical trialCTSL3P
Miscellaneous
canSAR (ICR)CTSL3P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTSL3P
EVEXCTSL3P
GoPubMedCTSL3P
iHOPCTSL3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:41 CET 2017

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