Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CTSO (cathepsin O)

Identity

Other aliasCTSO1
HGNC (Hugo) CTSO
LocusID (NCBI) 1519
Atlas_Id 56691
Location 4q32.1  [Link to chromosome band 4q32]
Location_base_pair Starts at 155924118 and ends at 155953896 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CTSO (4q32.1) / CTSO (4q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTSO   2542
Cards
Entrez_Gene (NCBI)CTSO  1519  cathepsin O
AliasesCTSO1
GeneCards (Weizmann)CTSO
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:155924118-155953896 [Contig_View]  CTSO [Vega]
TCGA cBioPortalCTSO
AceView (NCBI)CTSO
Genatlas (Paris)CTSO
WikiGenes1519
SOURCE (Princeton)CTSO
Genetics Home Reference (NIH)CTSO
Genomic and cartography
GoldenPath hg38 (UCSC)CTSO  -     chr4:155924118-155953896 -  4q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTSO  -     4q32.1   [Description]    (hg19-Feb_2009)
EnsemblCTSO - 4q32.1 [CytoView hg19]  CTSO - 4q32.1 [CytoView hg38]
Mapping of homologs : NCBICTSO [Mapview hg19]  CTSO [Mapview hg38]
OMIM600550   
Gene and transcription
Genbank (Entrez)AK300112 AK308323 AK312354 BC049206 BG617165
RefSeq transcript (Entrez)NM_001334
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTSO
Cluster EST : UnigeneHs.75262 [ NCBI ]
CGAP (NCI)Hs.75262
Gene ExpressionCTSO [ NCBI-GEO ]   CTSO [ EBI - ARRAY_EXPRESS ]   CTSO [ SEEK ]   CTSO [ MEM ]
Gene Expression Viewer (FireBrowse)CTSO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1519
GTEX Portal (Tissue expression)CTSO
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43234   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43234  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43234
Splice isoforms : SwissVarP43234
Catalytic activity : Enzyme3.4.22.42 [ Enzyme-Expasy ]   3.4.22.423.4.22.42 [ IntEnz-EBI ]   3.4.22.42 [ BRENDA ]   3.4.22.42 [ KEGG ]   
PhosPhoSitePlusP43234
Domaine pattern : Prosite (Expaxy)THIOL_PROTEASE_CYS (PS00139)    THIOL_PROTEASE_HIS (PS00639)   
Domains : Interpro (EBI)Pept_cys_AS    Pept_his_AS    Peptidase_C1A    Peptidase_C1A_C   
Domain families : Pfam (Sanger)Peptidase_C1 (PF00112)   
Domain families : Pfam (NCBI)pfam00112   
Domain families : Smart (EMBL)Pept_C1 (SM00645)  
Conserved Domain (NCBI)CTSO
DMDM Disease mutations1519
Blocks (Seattle)CTSO
SuperfamilyP43234
Peptide AtlasP43234
IPIIPI00017257   IPI00909170   
Protein Interaction databases
DIP (DOE-UCLA)P43234
IntAct (EBI)P43234
BioGRIDCTSO
STRING (EMBL)CTSO
ZODIACCTSO
Ontologies - Pathways
QuickGOP43234
Ontology : AmiGOcysteine-type endopeptidase activity  extracellular space  lysosome  proteolysis  proteolysis involved in cellular protein catabolic process  
Ontology : EGO-EBIcysteine-type endopeptidase activity  extracellular space  lysosome  proteolysis  proteolysis involved in cellular protein catabolic process  
Pathways : KEGGLysosome   
NDEx NetworkCTSO
Atlas of Cancer Signalling NetworkCTSO
Wikipedia pathwaysCTSO
Orthology - Evolution
OrthoDB1519
Phylogenetic Trees/Animal Genes : TreeFamCTSO
HOVERGENP43234
HOGENOMP43234
Homologs : HomoloGeneCTSO
Homology/Alignments : Family Browser (UCSC)CTSO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTSO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTSO
dbVarCTSO
ClinVarCTSO
1000_GenomesCTSO 
Exome Variant ServerCTSO
ExAC (Exome Aggregation Consortium)CTSO (select the gene name)
Genetic variants : HAPMAP1519
Genomic Variants (DGV)CTSO [DGVbeta]
DECIPHERCTSO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTSO 
Mutations
ICGC Data PortalCTSO 
TCGA Data PortalCTSO 
Broad Tumor PortalCTSO
OASIS PortalCTSO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTSO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTSO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTSO
DgiDB (Drug Gene Interaction Database)CTSO
DoCM (Curated mutations)CTSO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTSO (select a term)
intoGenCTSO
Cancer3DCTSO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600550   
Orphanet
MedgenCTSO
Genetic Testing Registry CTSO
NextProtP43234 [Medical]
TSGene1519
GENETestsCTSO
Target ValidationCTSO
Huge Navigator CTSO [HugePedia]
snp3D : Map Gene to Disease1519
BioCentury BCIQCTSO
ClinGenCTSO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1519
Chemical/Pharm GKB GenePA27040
Clinical trialCTSO
Miscellaneous
canSAR (ICR)CTSO (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTSO
EVEXCTSO
GoPubMedCTSO
iHOPCTSO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:50:59 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.