Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CTTNBP2 (cortactin binding protein 2)

Identity

Alias_namesCORTBP2
C7orf8
cortactin binding protein 2
Alias_symbol (synonym)KIAA1758
Orf4
Other alias
HGNC (Hugo) CTTNBP2
LocusID (NCBI) 83992
Atlas_Id 62195
Location 7q31.31  [Link to chromosome band 7q31]
Location_base_pair Starts at 117710651 and ends at 117873507 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		CTTNBP2 (7q31.2) / CTTNBP2 (7q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CTTNBP2   15679
Cards
Entrez_Gene (NCBI)CTTNBP2  83992  cortactin binding protein 2
AliasesC7orf8; CORTBP2; Orf4
GeneCards (Weizmann)CTTNBP2
Ensembl hg19 (Hinxton)ENSG00000077063 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000077063 [Gene_View]  chr7:117710651-117873507 [Contig_View]  CTTNBP2 [Vega]
ICGC DataPortalENSG00000077063
TCGA cBioPortalCTTNBP2
AceView (NCBI)CTTNBP2
Genatlas (Paris)CTTNBP2
WikiGenes83992
SOURCE (Princeton)CTTNBP2
Genetics Home Reference (NIH)CTTNBP2
Genomic and cartography
GoldenPath hg38 (UCSC)CTTNBP2  -     chr7:117710651-117873507 -  7q31.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTTNBP2  -     7q31.31   [Description]    (hg19-Feb_2009)
EnsemblCTTNBP2 - 7q31.31 [CytoView hg19]  CTTNBP2 - 7q31.31 [CytoView hg38]
Mapping of homologs : NCBICTTNBP2 [Mapview hg19]  CTTNBP2 [Mapview hg38]
OMIM609772   
Gene and transcription
Genbank (Entrez)AB051545 AF377960 AK091548 AK096565 AK308081
RefSeq transcript (Entrez)NM_033427
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTTNBP2
Cluster EST : UnigeneHs.592285 [ NCBI ]
CGAP (NCI)Hs.592285
Alternative Splicing GalleryENSG00000077063
Gene ExpressionCTTNBP2 [ NCBI-GEO ]   CTTNBP2 [ EBI - ARRAY_EXPRESS ]   CTTNBP2 [ SEEK ]   CTTNBP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CTTNBP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83992
GTEX Portal (Tissue expression)CTTNBP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WZ74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WZ74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WZ74
Splice isoforms : SwissVarQ8WZ74
PhosPhoSitePlusQ8WZ74
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Cortactin-binding_p2_N   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    CortBP2 (PF09727)   
Domain families : Pfam (NCBI)pfam12796    pfam09727   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)CTTNBP2
DMDM Disease mutations83992
Blocks (Seattle)CTTNBP2
SuperfamilyQ8WZ74
Human Protein AtlasENSG00000077063
Peptide AtlasQ8WZ74
HPRD09890
IPIIPI00103869   IPI00852771   IPI00657792   IPI00853037   IPI00853209   IPI00852908   IPI00853103   IPI00879920   IPI00892787   
Protein Interaction databases
DIP (DOE-UCLA)Q8WZ74
IntAct (EBI)Q8WZ74
FunCoupENSG00000077063
BioGRIDCTTNBP2
STRING (EMBL)CTTNBP2
ZODIACCTTNBP2
Ontologies - Pathways
QuickGOQ8WZ74
Ontology : AmiGOcell cortex  brain development  synaptic vesicle  SH3 domain binding  dendritic spine  
Ontology : EGO-EBIcell cortex  brain development  synaptic vesicle  SH3 domain binding  dendritic spine  
NDEx NetworkCTTNBP2
Atlas of Cancer Signalling NetworkCTTNBP2
Wikipedia pathwaysCTTNBP2
Orthology - Evolution
OrthoDB83992
GeneTree (enSembl)ENSG00000077063
Phylogenetic Trees/Animal Genes : TreeFamCTTNBP2
HOVERGENQ8WZ74
HOGENOMQ8WZ74
Homologs : HomoloGeneCTTNBP2
Homology/Alignments : Family Browser (UCSC)CTTNBP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTTNBP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTTNBP2
dbVarCTTNBP2
ClinVarCTTNBP2
1000_GenomesCTTNBP2 
Exome Variant ServerCTTNBP2
ExAC (Exome Aggregation Consortium)CTTNBP2 (select the gene name)
Genetic variants : HAPMAP83992
Genomic Variants (DGV)CTTNBP2 [DGVbeta]
DECIPHERCTTNBP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTTNBP2 
Mutations
ICGC Data PortalCTTNBP2 
TCGA Data PortalCTTNBP2 
Broad Tumor PortalCTTNBP2
OASIS PortalCTTNBP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTTNBP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTTNBP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTTNBP2
DgiDB (Drug Gene Interaction Database)CTTNBP2
DoCM (Curated mutations)CTTNBP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTTNBP2 (select a term)
intoGenCTTNBP2
Cancer3DCTTNBP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609772   
Orphanet
MedgenCTTNBP2
Genetic Testing Registry CTTNBP2
NextProtQ8WZ74 [Medical]
TSGene83992
GENETestsCTTNBP2
Target ValidationCTTNBP2
Huge Navigator CTTNBP2 [HugePedia]
snp3D : Map Gene to Disease83992
BioCentury BCIQCTTNBP2
ClinGenCTTNBP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83992
Chemical/Pharm GKB GenePA26774
Clinical trialCTTNBP2
Miscellaneous
canSAR (ICR)CTTNBP2 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTTNBP2
EVEXCTTNBP2
GoPubMedCTTNBP2
iHOPCTTNBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:36 CEST 2017
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