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CTTNBP2NL (CTTNBP2 N-terminal like)

Identity

Alias_symbol (synonym)DKFZp547A023
Other alias-
HGNC (Hugo) CTTNBP2NL
LocusID (NCBI) 55917
Atlas_Id 62196
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 112396178 and ends at 112461164 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTTNBP2NL (1p13.2) / BCL9L (11q23.3)CTTNBP2NL (1p13.2) / CTTNBP2NL (1p13.2)CTTNBP2NL (1p13.2) / RP11-315O6.2 ()
CTTNBP2NL (1p13.2) / RPL41 (12q13.2)CTTNBP2NL (1p13.2) / SEPT2 (2q37.3)CTTNBP2NL (1p13.2) / SUCLA2 (13q14.2)
CTTNBP2NL (1p13.2) / TUBB4B (9q34.3)RAP1GAP2 (17p13.3) / CTTNBP2NL (1p13.2)CTTNBP2NL SUCLA2
CTTNBP2NL RP11-315O6.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTTNBP2NL   25330
Cards
Entrez_Gene (NCBI)CTTNBP2NL  55917  CTTNBP2 N-terminal like
Aliases
GeneCards (Weizmann)CTTNBP2NL
Ensembl hg19 (Hinxton)ENSG00000143079 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143079 [Gene_View]  chr1:112396178-112461164 [Contig_View]  CTTNBP2NL [Vega]
ICGC DataPortalENSG00000143079
TCGA cBioPortalCTTNBP2NL
AceView (NCBI)CTTNBP2NL
Genatlas (Paris)CTTNBP2NL
WikiGenes55917
SOURCE (Princeton)CTTNBP2NL
Genetics Home Reference (NIH)CTTNBP2NL
Genomic and cartography
GoldenPath hg38 (UCSC)CTTNBP2NL  -     chr1:112396178-112461164 +  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTTNBP2NL  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblCTTNBP2NL - 1p13.2 [CytoView hg19]  CTTNBP2NL - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBICTTNBP2NL [Mapview hg19]  CTTNBP2NL [Mapview hg38]
OMIM615100   
Gene and transcription
Genbank (Entrez)AK022544 AK023340 AK055261 AL359565 AL598321
RefSeq transcript (Entrez)NM_018704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTTNBP2NL
Cluster EST : UnigeneHs.744100 [ NCBI ]
CGAP (NCI)Hs.744100
Alternative Splicing GalleryENSG00000143079
Gene ExpressionCTTNBP2NL [ NCBI-GEO ]   CTTNBP2NL [ EBI - ARRAY_EXPRESS ]   CTTNBP2NL [ SEEK ]   CTTNBP2NL [ MEM ]
Gene Expression Viewer (FireBrowse)CTTNBP2NL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55917
GTEX Portal (Tissue expression)CTTNBP2NL
Human Protein AtlasENSG00000143079-CTTNBP2NL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2B4
Splice isoforms : SwissVarQ9P2B4
PhosPhoSitePlusQ9P2B4
Domains : Interpro (EBI)Cortactin-binding_p2_N   
Domain families : Pfam (Sanger)CortBP2 (PF09727)   
Domain families : Pfam (NCBI)pfam09727   
Conserved Domain (NCBI)CTTNBP2NL
DMDM Disease mutations55917
Blocks (Seattle)CTTNBP2NL
SuperfamilyQ9P2B4
Human Protein Atlas [tissue]ENSG00000143079-CTTNBP2NL [tissue]
Peptide AtlasQ9P2B4
HPRD10906
IPIIPI00514311   IPI00103980   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2B4
IntAct (EBI)Q9P2B4
FunCoupENSG00000143079
BioGRIDCTTNBP2NL
STRING (EMBL)CTTNBP2NL
ZODIACCTTNBP2NL
Ontologies - Pathways
QuickGOQ9P2B4
Ontology : AmiGOprotein binding  cytoplasm  protein dephosphorylation  actin cytoskeleton  negative regulation of transporter activity  negative regulation of transmembrane transport  protein phosphatase 2A binding  
Ontology : EGO-EBIprotein binding  cytoplasm  protein dephosphorylation  actin cytoskeleton  negative regulation of transporter activity  negative regulation of transmembrane transport  protein phosphatase 2A binding  
NDEx NetworkCTTNBP2NL
Atlas of Cancer Signalling NetworkCTTNBP2NL
Wikipedia pathwaysCTTNBP2NL
Orthology - Evolution
OrthoDB55917
GeneTree (enSembl)ENSG00000143079
Phylogenetic Trees/Animal Genes : TreeFamCTTNBP2NL
HOVERGENQ9P2B4
HOGENOMQ9P2B4
Homologs : HomoloGeneCTTNBP2NL
Homology/Alignments : Family Browser (UCSC)CTTNBP2NL
Gene fusions - Rearrangements
Fusion: TCGA_MDACCCTTNBP2NL SUCLA2
Fusion: TCGA_MDACCCTTNBP2NL RP11-315O6.2
Tumor Fusion PortalCTTNBP2NL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTTNBP2NL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTTNBP2NL
dbVarCTTNBP2NL
ClinVarCTTNBP2NL
1000_GenomesCTTNBP2NL 
Exome Variant ServerCTTNBP2NL
ExAC (Exome Aggregation Consortium)ENSG00000143079
GNOMAD BrowserENSG00000143079
Genetic variants : HAPMAP55917
Genomic Variants (DGV)CTTNBP2NL [DGVbeta]
DECIPHERCTTNBP2NL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTTNBP2NL 
Mutations
ICGC Data PortalCTTNBP2NL 
TCGA Data PortalCTTNBP2NL 
Broad Tumor PortalCTTNBP2NL
OASIS PortalCTTNBP2NL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTTNBP2NL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTTNBP2NL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTTNBP2NL
DgiDB (Drug Gene Interaction Database)CTTNBP2NL
DoCM (Curated mutations)CTTNBP2NL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTTNBP2NL (select a term)
intoGenCTTNBP2NL
Cancer3DCTTNBP2NL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615100   
Orphanet
DisGeNETCTTNBP2NL
MedgenCTTNBP2NL
Genetic Testing Registry CTTNBP2NL
NextProtQ9P2B4 [Medical]
TSGene55917
GENETestsCTTNBP2NL
Target ValidationCTTNBP2NL
Huge Navigator CTTNBP2NL [HugePedia]
snp3D : Map Gene to Disease55917
BioCentury BCIQCTTNBP2NL
ClinGenCTTNBP2NL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55917
Chemical/Pharm GKB GenePA142672062
Clinical trialCTTNBP2NL
Miscellaneous
canSAR (ICR)CTTNBP2NL (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTTNBP2NL
EVEXCTTNBP2NL
GoPubMedCTTNBP2NL
iHOPCTTNBP2NL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 12:59:48 CET 2017

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