Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CTU1 (cytosolic thiouridylase subunit 1)

Identity

Alias_namesATPBD3
ATP binding domain 3
cytosolic thiouridylase subunit 1 homolog (S. pombe)
Alias_symbol (synonym)MGC17332
NCS6
Other alias
HGNC (Hugo) CTU1
LocusID (NCBI) 90353
Atlas_Id 62197
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51097606 and ends at 51108390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF549 (19q13.43) / CTU1 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTU1   29590
Cards
Entrez_Gene (NCBI)CTU1  90353  cytosolic thiouridylase subunit 1
AliasesATPBD3; NCS6
GeneCards (Weizmann)CTU1
Ensembl hg19 (Hinxton)ENSG00000142544 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142544 [Gene_View]  chr19:51097606-51108390 [Contig_View]  CTU1 [Vega]
ICGC DataPortalENSG00000142544
TCGA cBioPortalCTU1
AceView (NCBI)CTU1
Genatlas (Paris)CTU1
WikiGenes90353
SOURCE (Princeton)CTU1
Genetics Home Reference (NIH)CTU1
Genomic and cartography
GoldenPath hg38 (UCSC)CTU1  -     chr19:51097606-51108390 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTU1  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblCTU1 - 19q13.41 [CytoView hg19]  CTU1 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBICTU1 [Mapview hg19]  CTU1 [Mapview hg38]
OMIM612694   
Gene and transcription
Genbank (Entrez)AK291173 BC009037 BX440723
RefSeq transcript (Entrez)NM_145232
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTU1
Cluster EST : UnigeneHs.148425 [ NCBI ]
CGAP (NCI)Hs.148425
Alternative Splicing GalleryENSG00000142544
Gene ExpressionCTU1 [ NCBI-GEO ]   CTU1 [ EBI - ARRAY_EXPRESS ]   CTU1 [ SEEK ]   CTU1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTU1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90353
GTEX Portal (Tissue expression)CTU1
Human Protein AtlasENSG00000142544-CTU1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7A3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7A3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7A3
Splice isoforms : SwissVarQ7Z7A3
PhosPhoSitePlusQ7Z7A3
Domains : Interpro (EBI)2-thiocytidine_tRNA_synth_TtcA    CTU1_C    Ncs6/Tuc1/Ctu1    Rossmann-like_a/b/a_fold    TilS/TtcA_N   
Domain families : Pfam (Sanger)ATP_bind_3 (PF01171)    zn-ribbon_14 (PF16503)   
Domain families : Pfam (NCBI)pfam01171    pfam16503   
Conserved Domain (NCBI)CTU1
DMDM Disease mutations90353
Blocks (Seattle)CTU1
SuperfamilyQ7Z7A3
Human Protein Atlas [tissue]ENSG00000142544-CTU1 [tissue]
Peptide AtlasQ7Z7A3
HPRD14270
IPIIPI00062882   IPI00979482   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7A3
IntAct (EBI)Q7Z7A3
FunCoupENSG00000142544
BioGRIDCTU1
STRING (EMBL)CTU1
ZODIACCTU1
Ontologies - Pathways
QuickGOQ7Z7A3
Ontology : AmiGOtRNA binding  tRNA wobble uridine modification  protein binding  mitochondrion  cytosol  cytosol  tRNA modification  transferase activity  tRNA thio-modification  
Ontology : EGO-EBItRNA binding  tRNA wobble uridine modification  protein binding  mitochondrion  cytosol  cytosol  tRNA modification  transferase activity  tRNA thio-modification  
Pathways : KEGGSulfur relay system   
NDEx NetworkCTU1
Atlas of Cancer Signalling NetworkCTU1
Wikipedia pathwaysCTU1
Orthology - Evolution
OrthoDB90353
GeneTree (enSembl)ENSG00000142544
Phylogenetic Trees/Animal Genes : TreeFamCTU1
HOVERGENQ7Z7A3
HOGENOMQ7Z7A3
Homologs : HomoloGeneCTU1
Homology/Alignments : Family Browser (UCSC)CTU1
Gene fusions - Rearrangements
Tumor Fusion PortalCTU1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTU1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTU1
dbVarCTU1
ClinVarCTU1
1000_GenomesCTU1 
Exome Variant ServerCTU1
ExAC (Exome Aggregation Consortium)ENSG00000142544
GNOMAD BrowserENSG00000142544
Genetic variants : HAPMAP90353
Genomic Variants (DGV)CTU1 [DGVbeta]
DECIPHERCTU1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTU1 
Mutations
ICGC Data PortalCTU1 
TCGA Data PortalCTU1 
Broad Tumor PortalCTU1
OASIS PortalCTU1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTU1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTU1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTU1
DgiDB (Drug Gene Interaction Database)CTU1
DoCM (Curated mutations)CTU1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTU1 (select a term)
intoGenCTU1
Cancer3DCTU1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612694   
Orphanet
DisGeNETCTU1
MedgenCTU1
Genetic Testing Registry CTU1
NextProtQ7Z7A3 [Medical]
TSGene90353
GENETestsCTU1
Target ValidationCTU1
Huge Navigator CTU1 [HugePedia]
snp3D : Map Gene to Disease90353
BioCentury BCIQCTU1
ClinGenCTU1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90353
Chemical/Pharm GKB GenePA165393368
Clinical trialCTU1
Miscellaneous
canSAR (ICR)CTU1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTU1
EVEXCTU1
GoPubMedCTU1
iHOPCTU1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:25:24 CET 2017

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