Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CTU2 (cytosolic thiouridylase subunit 2)

Identity

Alias_namesC16orf84
chromosome 16 open reading frame 84
cytosolic thiouridylase subunit 2 homolog (S. pombe)
Alias_symbol (synonym)NCS2
Other aliasUPF0432
HGNC (Hugo) CTU2
LocusID (NCBI) 348180
Atlas_Id 62198
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 88706463 and ends at 88715378 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTU2 (16q24.3) / PRKAR2A (3p21.31)CTU2 (16q24.3) / ZC3H18 (16q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTU2   28005
Cards
Entrez_Gene (NCBI)CTU2  348180  cytosolic thiouridylase subunit 2
AliasesC16orf84; NCS2; UPF0432
GeneCards (Weizmann)CTU2
Ensembl hg19 (Hinxton)ENSG00000174177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174177 [Gene_View]  chr16:88706463-88715378 [Contig_View]  CTU2 [Vega]
ICGC DataPortalENSG00000174177
TCGA cBioPortalCTU2
AceView (NCBI)CTU2
Genatlas (Paris)CTU2
WikiGenes348180
SOURCE (Princeton)CTU2
Genetics Home Reference (NIH)CTU2
Genomic and cartography
GoldenPath hg38 (UCSC)CTU2  -     chr16:88706463-88715378 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTU2  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblCTU2 - 16q24.3 [CytoView hg19]  CTU2 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBICTU2 [Mapview hg19]  CTU2 [Mapview hg38]
OMIM617057   
Gene and transcription
Genbank (Entrez)AA448486 AK299521 BC021056 BC021829 BC044951
RefSeq transcript (Entrez)NM_001012759 NM_001012762 NM_001318507 NM_001318513
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTU2
Cluster EST : UnigeneHs.592074 [ NCBI ]
CGAP (NCI)Hs.592074
Alternative Splicing GalleryENSG00000174177
Gene ExpressionCTU2 [ NCBI-GEO ]   CTU2 [ EBI - ARRAY_EXPRESS ]   CTU2 [ SEEK ]   CTU2 [ MEM ]
Gene Expression Viewer (FireBrowse)CTU2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348180
GTEX Portal (Tissue expression)CTU2
Human Protein AtlasENSG00000174177-CTU2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2VPK5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2VPK5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2VPK5
Splice isoforms : SwissVarQ2VPK5
PhosPhoSitePlusQ2VPK5
Domains : Interpro (EBI)CTU2    Rossmann-like_a/b/a_fold   
Domain families : Pfam (Sanger)CTU2 (PF10288)   
Domain families : Pfam (NCBI)pfam10288   
Conserved Domain (NCBI)CTU2
DMDM Disease mutations348180
Blocks (Seattle)CTU2
SuperfamilyQ2VPK5
Human Protein Atlas [tissue]ENSG00000174177-CTU2 [tissue]
Peptide AtlasQ2VPK5
HPRD18372
IPIIPI00455719   IPI00848327   IPI00554765   
Protein Interaction databases
DIP (DOE-UCLA)Q2VPK5
IntAct (EBI)Q2VPK5
FunCoupENSG00000174177
BioGRIDCTU2
STRING (EMBL)CTU2
ZODIACCTU2
Ontologies - Pathways
QuickGOQ2VPK5
Ontology : AmiGOtRNA binding  tRNA wobble uridine modification  tRNA wobble position uridine thiolation  protein binding  cytosol  cytosol  tRNA modification  sulfurtransferase activity  tRNA thio-modification  protein complex  
Ontology : EGO-EBItRNA binding  tRNA wobble uridine modification  tRNA wobble position uridine thiolation  protein binding  cytosol  cytosol  tRNA modification  sulfurtransferase activity  tRNA thio-modification  protein complex  
Pathways : KEGGSulfur relay system   
NDEx NetworkCTU2
Atlas of Cancer Signalling NetworkCTU2
Wikipedia pathwaysCTU2
Orthology - Evolution
OrthoDB348180
GeneTree (enSembl)ENSG00000174177
Phylogenetic Trees/Animal Genes : TreeFamCTU2
HOVERGENQ2VPK5
HOGENOMQ2VPK5
Homologs : HomoloGeneCTU2
Homology/Alignments : Family Browser (UCSC)CTU2
Gene fusions - Rearrangements
Fusion: Tumor Portal CTU2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTU2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTU2
dbVarCTU2
ClinVarCTU2
1000_GenomesCTU2 
Exome Variant ServerCTU2
ExAC (Exome Aggregation Consortium)ENSG00000174177
GNOMAD BrowserENSG00000174177
Genetic variants : HAPMAP348180
Genomic Variants (DGV)CTU2 [DGVbeta]
DECIPHERCTU2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTU2 
Mutations
ICGC Data PortalCTU2 
TCGA Data PortalCTU2 
Broad Tumor PortalCTU2
OASIS PortalCTU2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTU2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTU2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTU2
DgiDB (Drug Gene Interaction Database)CTU2
DoCM (Curated mutations)CTU2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTU2 (select a term)
intoGenCTU2
Cancer3DCTU2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617057   
Orphanet
MedgenCTU2
Genetic Testing Registry CTU2
NextProtQ2VPK5 [Medical]
TSGene348180
GENETestsCTU2
Target ValidationCTU2
Huge Navigator CTU2 [HugePedia]
snp3D : Map Gene to Disease348180
BioCentury BCIQCTU2
ClinGenCTU2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348180
Chemical/Pharm GKB GenePA165449882
Clinical trialCTU2
Miscellaneous
canSAR (ICR)CTU2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTU2
EVEXCTU2
GoPubMedCTU2
iHOPCTU2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:43:43 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.