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CTXN1 (cortexin 1)

Identity

Alias_symbol (synonym)FLJ25968
Other aliasCTXN
HGNC (Hugo) CTXN1
LocusID (NCBI) 404217
Atlas_Id 62199
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7924496 and ends at 7926166 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL26A1 (7q22.1) / CTXN1 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTXN1   31108
Cards
Entrez_Gene (NCBI)CTXN1  404217  cortexin 1
AliasesCTXN
GeneCards (Weizmann)CTXN1
Ensembl hg19 (Hinxton)ENSG00000178531 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178531 [Gene_View]  chr19:7924496-7926166 [Contig_View]  CTXN1 [Vega]
ICGC DataPortalENSG00000178531
TCGA cBioPortalCTXN1
AceView (NCBI)CTXN1
Genatlas (Paris)CTXN1
WikiGenes404217
SOURCE (Princeton)CTXN1
Genetics Home Reference (NIH)CTXN1
Genomic and cartography
GoldenPath hg38 (UCSC)CTXN1  -     chr19:7924496-7926166 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTXN1  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblCTXN1 - 19p13.2 [CytoView hg19]  CTXN1 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBICTXN1 [Mapview hg19]  CTXN1 [Mapview hg38]
OMIM600135   
Gene and transcription
Genbank (Entrez)AK098834 BC024148 BC062702
RefSeq transcript (Entrez)NM_206833
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTXN1
Cluster EST : UnigeneHs.657978 [ NCBI ]
CGAP (NCI)Hs.657978
Alternative Splicing GalleryENSG00000178531
Gene ExpressionCTXN1 [ NCBI-GEO ]   CTXN1 [ EBI - ARRAY_EXPRESS ]   CTXN1 [ SEEK ]   CTXN1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTXN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404217
GTEX Portal (Tissue expression)CTXN1
Human Protein AtlasENSG00000178531-CTXN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60606   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60606  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60606
Splice isoforms : SwissVarP60606
PhosPhoSitePlusP60606
Domains : Interpro (EBI)Cortexin   
Domain families : Pfam (Sanger)Cortexin (PF11057)   
Domain families : Pfam (NCBI)pfam11057   
Domain structure : Prodom (Prabi Lyon)Cortexin (PD054489)   
Conserved Domain (NCBI)CTXN1
DMDM Disease mutations404217
Blocks (Seattle)CTXN1
SuperfamilyP60606
Human Protein Atlas [tissue]ENSG00000178531-CTXN1 [tissue]
Peptide AtlasP60606
HPRD13097
IPIIPI00409651   
Protein Interaction databases
DIP (DOE-UCLA)P60606
IntAct (EBI)P60606
FunCoupENSG00000178531
BioGRIDCTXN1
STRING (EMBL)CTXN1
ZODIACCTXN1
Ontologies - Pathways
QuickGOP60606
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCTXN1
Atlas of Cancer Signalling NetworkCTXN1
Wikipedia pathwaysCTXN1
Orthology - Evolution
OrthoDB404217
GeneTree (enSembl)ENSG00000178531
Phylogenetic Trees/Animal Genes : TreeFamCTXN1
HOVERGENP60606
HOGENOMP60606
Homologs : HomoloGeneCTXN1
Homology/Alignments : Family Browser (UCSC)CTXN1
Gene fusions - Rearrangements
Fusion: Tumor Portal CTXN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTXN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTXN1
dbVarCTXN1
ClinVarCTXN1
1000_GenomesCTXN1 
Exome Variant ServerCTXN1
ExAC (Exome Aggregation Consortium)ENSG00000178531
GNOMAD BrowserENSG00000178531
Genetic variants : HAPMAP404217
Genomic Variants (DGV)CTXN1 [DGVbeta]
DECIPHERCTXN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTXN1 
Mutations
ICGC Data PortalCTXN1 
TCGA Data PortalCTXN1 
Broad Tumor PortalCTXN1
OASIS PortalCTXN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTXN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTXN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTXN1
DgiDB (Drug Gene Interaction Database)CTXN1
DoCM (Curated mutations)CTXN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTXN1 (select a term)
intoGenCTXN1
Cancer3DCTXN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600135   
Orphanet
MedgenCTXN1
Genetic Testing Registry CTXN1
NextProtP60606 [Medical]
TSGene404217
GENETestsCTXN1
Target ValidationCTXN1
Huge Navigator CTXN1 [HugePedia]
snp3D : Map Gene to Disease404217
BioCentury BCIQCTXN1
ClinGenCTXN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404217
Chemical/Pharm GKB GenePA134944051
Clinical trialCTXN1
Miscellaneous
canSAR (ICR)CTXN1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTXN1
EVEXCTXN1
GoPubMedCTXN1
iHOPCTXN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:43 CET 2017

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