Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CTXN2 (cortexin 2)

Identity

Other alias-
HGNC (Hugo) CTXN2
LocusID (NCBI) 399697
Atlas_Id 62200
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 48191670 and ends at 48203754 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTXN2   31109
Cards
Entrez_Gene (NCBI)CTXN2  399697  cortexin 2
Aliases
GeneCards (Weizmann)CTXN2
Ensembl hg19 (Hinxton)ENSG00000233932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233932 [Gene_View]  chr15:48191670-48203754 [Contig_View]  CTXN2 [Vega]
ICGC DataPortalENSG00000233932
TCGA cBioPortalCTXN2
AceView (NCBI)CTXN2
Genatlas (Paris)CTXN2
WikiGenes399697
SOURCE (Princeton)CTXN2
Genetics Home Reference (NIH)CTXN2
Genomic and cartography
GoldenPath hg38 (UCSC)CTXN2  -     chr15:48191670-48203754 +  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTXN2  -     15q21.1   [Description]    (hg19-Feb_2009)
EnsemblCTXN2 - 15q21.1 [CytoView hg19]  CTXN2 - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBICTXN2 [Mapview hg19]  CTXN2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX537772
RefSeq transcript (Entrez)NM_001145668
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTXN2
Cluster EST : UnigeneHs.721408 [ NCBI ]
CGAP (NCI)Hs.721408
Alternative Splicing GalleryENSG00000233932
Gene ExpressionCTXN2 [ NCBI-GEO ]   CTXN2 [ EBI - ARRAY_EXPRESS ]   CTXN2 [ SEEK ]   CTXN2 [ MEM ]
Gene Expression Viewer (FireBrowse)CTXN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399697
GTEX Portal (Tissue expression)CTXN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C2S0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C2S0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C2S0
Splice isoforms : SwissVarP0C2S0
PhosPhoSitePlusP0C2S0
Domains : Interpro (EBI)Cortexin   
Domain families : Pfam (Sanger)Cortexin (PF11057)   
Domain families : Pfam (NCBI)pfam11057   
Domain structure : Prodom (Prabi Lyon)Cortexin (PD054489)   
Conserved Domain (NCBI)CTXN2
DMDM Disease mutations399697
Blocks (Seattle)CTXN2
SuperfamilyP0C2S0
Human Protein AtlasENSG00000233932
Peptide AtlasP0C2S0
IPIIPI00743048   
Protein Interaction databases
DIP (DOE-UCLA)P0C2S0
IntAct (EBI)P0C2S0
FunCoupENSG00000233932
BioGRIDCTXN2
STRING (EMBL)CTXN2
ZODIACCTXN2
Ontologies - Pathways
QuickGOP0C2S0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCTXN2
Atlas of Cancer Signalling NetworkCTXN2
Wikipedia pathwaysCTXN2
Orthology - Evolution
OrthoDB399697
GeneTree (enSembl)ENSG00000233932
Phylogenetic Trees/Animal Genes : TreeFamCTXN2
HOVERGENP0C2S0
HOGENOMP0C2S0
Homologs : HomoloGeneCTXN2
Homology/Alignments : Family Browser (UCSC)CTXN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTXN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTXN2
dbVarCTXN2
ClinVarCTXN2
1000_GenomesCTXN2 
Exome Variant ServerCTXN2
ExAC (Exome Aggregation Consortium)CTXN2 (select the gene name)
Genetic variants : HAPMAP399697
Genomic Variants (DGV)CTXN2 [DGVbeta]
DECIPHERCTXN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCTXN2 
Mutations
ICGC Data PortalCTXN2 
TCGA Data PortalCTXN2 
Broad Tumor PortalCTXN2
OASIS PortalCTXN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTXN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTXN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTXN2
DgiDB (Drug Gene Interaction Database)CTXN2
DoCM (Curated mutations)CTXN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTXN2 (select a term)
intoGenCTXN2
Cancer3DCTXN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCTXN2
Genetic Testing Registry CTXN2
NextProtP0C2S0 [Medical]
TSGene399697
GENETestsCTXN2
Target ValidationCTXN2
Huge Navigator CTXN2 [HugePedia]
snp3D : Map Gene to Disease399697
BioCentury BCIQCTXN2
ClinGenCTXN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399697
Chemical/Pharm GKB GenePA134951739
Clinical trialCTXN2
Miscellaneous
canSAR (ICR)CTXN2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTXN2
EVEXCTXN2
GoPubMedCTXN2
iHOPCTXN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:37 CEST 2017

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