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CTXN3 (cortexin 3)

Identity

Other aliasKABE
HGNC (Hugo) CTXN3
LocusID (NCBI) 613212
Atlas_Id 62201
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 126984713 and ends at 126994322 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
XXbac-B461K10.4 () / CTXN3 (5q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CTXN3   31110
Cards
Entrez_Gene (NCBI)CTXN3  613212  cortexin 3
AliasesKABE
GeneCards (Weizmann)CTXN3
Ensembl hg19 (Hinxton)ENSG00000205279 [Gene_View]  chr5:126984713-126994322 [Contig_View]  CTXN3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205279 [Gene_View]  chr5:126984713-126994322 [Contig_View]  CTXN3 [Vega]
ICGC DataPortalENSG00000205279
TCGA cBioPortalCTXN3
AceView (NCBI)CTXN3
Genatlas (Paris)CTXN3
WikiGenes613212
SOURCE (Princeton)CTXN3
Genetics Home Reference (NIH)CTXN3
Genomic and cartography
GoldenPath hg19 (UCSC)CTXN3  -     chr5:126984713-126994322 +  5q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CTXN3  -     5q23.2   [Description]    (hg38-Dec_2013)
EnsemblCTXN3 - 5q23.2 [CytoView hg19]  CTXN3 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBICTXN3 [Mapview hg19]  CTXN3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB219764 AB219832 BC071790 BC147012 DA131605
RefSeq transcript (Entrez)NM_001048252 NM_001127385
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)CTXN3
Cluster EST : UnigeneHs.66194 [ NCBI ]
CGAP (NCI)Hs.66194
Alternative Splicing GalleryENSG00000205279
Gene ExpressionCTXN3 [ NCBI-GEO ]   CTXN3 [ EBI - ARRAY_EXPRESS ]   CTXN3 [ SEEK ]   CTXN3 [ MEM ]
Gene Expression Viewer (FireBrowse)CTXN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)613212
GTEX Portal (Tissue expression)CTXN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4LDR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4LDR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4LDR2
Splice isoforms : SwissVarQ4LDR2
PhosPhoSitePlusQ4LDR2
Domains : Interpro (EBI)Cortexin   
Domain families : Pfam (Sanger)Cortexin (PF11057)   
Domain families : Pfam (NCBI)pfam11057   
Domain structure : Prodom (Prabi Lyon)Cortexin (PD054489)   
Conserved Domain (NCBI)CTXN3
DMDM Disease mutations613212
Blocks (Seattle)CTXN3
SuperfamilyQ4LDR2
Human Protein AtlasENSG00000205279
Peptide AtlasQ4LDR2
IPIIPI00619909   
Protein Interaction databases
DIP (DOE-UCLA)Q4LDR2
IntAct (EBI)Q4LDR2
FunCoupENSG00000205279
BioGRIDCTXN3
STRING (EMBL)CTXN3
ZODIACCTXN3
Ontologies - Pathways
QuickGOQ4LDR2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCTXN3
Atlas of Cancer Signalling NetworkCTXN3
Wikipedia pathwaysCTXN3
Orthology - Evolution
OrthoDB613212
GeneTree (enSembl)ENSG00000205279
Phylogenetic Trees/Animal Genes : TreeFamCTXN3
HOVERGENQ4LDR2
HOGENOMQ4LDR2
Homologs : HomoloGeneCTXN3
Homology/Alignments : Family Browser (UCSC)CTXN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCTXN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CTXN3
dbVarCTXN3
ClinVarCTXN3
1000_GenomesCTXN3 
Exome Variant ServerCTXN3
ExAC (Exome Aggregation Consortium)CTXN3 (select the gene name)
Genetic variants : HAPMAP613212
Genomic Variants (DGV)CTXN3 [DGVbeta]
DECIPHER (Syndromes)5:126984713-126994322  ENSG00000205279
CONAN: Copy Number AnalysisCTXN3 
Mutations
ICGC Data PortalCTXN3 
TCGA Data PortalCTXN3 
Broad Tumor PortalCTXN3
OASIS PortalCTXN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCTXN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCTXN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CTXN3
DgiDB (Drug Gene Interaction Database)CTXN3
DoCM (Curated mutations)CTXN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CTXN3 (select a term)
intoGenCTXN3
Cancer3DCTXN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCTXN3
Genetic Testing Registry CTXN3
NextProtQ4LDR2 [Medical]
TSGene613212
GENETestsCTXN3
Huge Navigator CTXN3 [HugePedia]
snp3D : Map Gene to Disease613212
BioCentury BCIQCTXN3
ClinGenCTXN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD613212
Chemical/Pharm GKB GenePA134959223
Clinical trialCTXN3
Miscellaneous
canSAR (ICR)CTXN3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTXN3
EVEXCTXN3
GoPubMedCTXN3
iHOPCTXN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:43 CET 2017

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