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CTXND1 (cortexin domain containing 1)

Identity

Alias_namesLINC01314
long intergenic non-protein coding RNA 1314
Other alias
HGNC (Hugo) CTXND1
LocusID (NCBI) 100996492
Atlas_Id 79739
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 80195479 and ends at 80252261 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CTXND1   50507
Cards
Entrez_Gene (NCBI)CTXND1  100996492  cortexin domain containing 1
AliasesLINC01314
GeneCards (Weizmann)CTXND1
Ensembl hg19 (Hinxton)ENSG00000259417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259417 [Gene_View]  chr15:80195479-80252261 [Contig_View]  CTXND1 [Vega]
ICGC DataPortalENSG00000259417
TCGA cBioPortalCTXND1
AceView (NCBI)CTXND1
Genatlas (Paris)CTXND1
WikiGenes100996492
SOURCE (Princeton)CTXND1
Genetics Home Reference (NIH)CTXND1
Genomic and cartography
GoldenPath hg38 (UCSC)CTXND1  -     chr15:80195479-80252261 -  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CTXND1  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblCTXND1 - 15q25.1 [CytoView hg19]  CTXND1 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBICTXND1 [Mapview hg19]  CTXND1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124939 AL109671 AL109716 BF978831
RefSeq transcript (Entrez)NM_001352888
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CTXND1
Cluster EST : UnigeneHs.593529 [ NCBI ]
CGAP (NCI)Hs.593529
Alternative Splicing GalleryENSG00000259417
Gene ExpressionCTXND1 [ NCBI-GEO ]   CTXND1 [ EBI - ARRAY_EXPRESS ]   CTXND1 [ SEEK ]   CTXND1 [ MEM ]
Gene Expression Viewer (FireBrowse)CTXND1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100996492
GTEX Portal (Tissue expression)CTXND1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CTXND1
DMDM Disease mutations100996492
Blocks (Seattle)CTXND1
Human Protein AtlasENSG00000259417
Protein Interaction databases
FunCoupENSG00000259417
BioGRIDCTXND1
STRING (EMBL)CTXND1
ZODIACCTXND1
Ontologies - Pathways
Huge Navigator CTXND1 [HugePedia]
snp3D : Map Gene to Disease100996492
BioCentury BCIQCTXND1
ClinGenCTXND1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996492
Clinical trialCTXND1
Miscellaneous
canSAR (ICR)CTXND1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCTXND1
EVEXCTXND1
GoPubMedCTXND1
iHOPCTXND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:37 CEST 2017

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