Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CUEDC1 (CUE domain containing 1)

Identity

Other alias-
HGNC (Hugo) CUEDC1
LocusID (NCBI) 404093
Atlas_Id 62203
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 55938604 and ends at 56032684 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BRIP1 (17q23.2) / CUEDC1 (17q22)CUEDC1 (17q22) / AKIP1 (11p15.4)CUEDC1 (17q22) / CUEDC1 (17q22)
MRPS23 (17q22) / CUEDC1 (17q22)MRPS23 CUEDC1BRIP1 CUEDC1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CUEDC1   31350
Cards
Entrez_Gene (NCBI)CUEDC1  404093  CUE domain containing 1
Aliases
GeneCards (Weizmann)CUEDC1
Ensembl hg19 (Hinxton)ENSG00000180891 [Gene_View]  chr17:55938604-56032684 [Contig_View]  CUEDC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180891 [Gene_View]  chr17:55938604-56032684 [Contig_View]  CUEDC1 [Vega]
ICGC DataPortalENSG00000180891
TCGA cBioPortalCUEDC1
AceView (NCBI)CUEDC1
Genatlas (Paris)CUEDC1
WikiGenes404093
SOURCE (Princeton)CUEDC1
Genetics Home Reference (NIH)CUEDC1
Genomic and cartography
GoldenPath hg19 (UCSC)CUEDC1  -     chr17:55938604-56032684 -  17q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CUEDC1  -     17q22   [Description]    (hg38-Dec_2013)
EnsemblCUEDC1 - 17q22 [CytoView hg19]  CUEDC1 - 17q22 [CytoView hg38]
Mapping of homologs : NCBICUEDC1 [Mapview hg19]  CUEDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000746 AK000977 BC056882 BG475111 BU732837
RefSeq transcript (Entrez)NM_001271875 NM_001292025
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)CUEDC1
Cluster EST : UnigeneHs.46679 [ NCBI ]
CGAP (NCI)Hs.46679
Alternative Splicing GalleryENSG00000180891
Gene ExpressionCUEDC1 [ NCBI-GEO ]   CUEDC1 [ EBI - ARRAY_EXPRESS ]   CUEDC1 [ SEEK ]   CUEDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CUEDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404093
GTEX Portal (Tissue expression)CUEDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWM3
Splice isoforms : SwissVarQ9NWM3
PhosPhoSitePlusQ9NWM3
Domaine pattern : Prosite (Expaxy)CUE (PS51140)   
Domains : Interpro (EBI)CUE    UBA-like   
Domain families : Pfam (Sanger)CUE (PF02845)   
Domain families : Pfam (NCBI)pfam02845   
Domain families : Smart (EMBL)CUE (SM00546)  
Conserved Domain (NCBI)CUEDC1
DMDM Disease mutations404093
Blocks (Seattle)CUEDC1
PDB (SRS)2DHY   
PDB (PDBSum)2DHY   
PDB (IMB)2DHY   
PDB (RSDB)2DHY   
Structural Biology KnowledgeBase2DHY   
SCOP (Structural Classification of Proteins)2DHY   
CATH (Classification of proteins structures)2DHY   
SuperfamilyQ9NWM3
Human Protein AtlasENSG00000180891
Peptide AtlasQ9NWM3
HPRD13098
IPIIPI00017336   IPI00410105   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWM3
IntAct (EBI)Q9NWM3
FunCoupENSG00000180891
BioGRIDCUEDC1
STRING (EMBL)CUEDC1
ZODIACCUEDC1
Ontologies - Pathways
QuickGOQ9NWM3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCUEDC1
Atlas of Cancer Signalling NetworkCUEDC1
Wikipedia pathwaysCUEDC1
Orthology - Evolution
OrthoDB404093
GeneTree (enSembl)ENSG00000180891
Phylogenetic Trees/Animal Genes : TreeFamCUEDC1
HOVERGENQ9NWM3
HOGENOMQ9NWM3
Homologs : HomoloGeneCUEDC1
Homology/Alignments : Family Browser (UCSC)CUEDC1
Gene fusions - Rearrangements
Fusion: TCGAMRPS23 CUEDC1
Fusion: TCGABRIP1 CUEDC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCUEDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CUEDC1
dbVarCUEDC1
ClinVarCUEDC1
1000_GenomesCUEDC1 
Exome Variant ServerCUEDC1
ExAC (Exome Aggregation Consortium)CUEDC1 (select the gene name)
Genetic variants : HAPMAP404093
Genomic Variants (DGV)CUEDC1 [DGVbeta]
DECIPHER (Syndromes)17:55938604-56032684  ENSG00000180891
CONAN: Copy Number AnalysisCUEDC1 
Mutations
ICGC Data PortalCUEDC1 
TCGA Data PortalCUEDC1 
Broad Tumor PortalCUEDC1
OASIS PortalCUEDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCUEDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCUEDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CUEDC1
DgiDB (Drug Gene Interaction Database)CUEDC1
DoCM (Curated mutations)CUEDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CUEDC1 (select a term)
intoGenCUEDC1
Cancer3DCUEDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCUEDC1
Genetic Testing Registry CUEDC1
NextProtQ9NWM3 [Medical]
TSGene404093
GENETestsCUEDC1
Huge Navigator CUEDC1 [HugePedia]
snp3D : Map Gene to Disease404093
BioCentury BCIQCUEDC1
ClinGenCUEDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404093
Chemical/Pharm GKB GenePA134913154
Clinical trialCUEDC1
Miscellaneous
canSAR (ICR)CUEDC1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCUEDC1
EVEXCUEDC1
GoPubMedCUEDC1
iHOPCUEDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:43 CET 2017

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