Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CUEDC2 (CUE domain containing 2)

Identity

Alias_namesC10orf66
chromosome 10 open reading frame 66
Alias_symbol (synonym)MGC2491
Other aliasbA18I14.5
HGNC (Hugo) CUEDC2
LocusID (NCBI) 79004
Atlas_Id 47645
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 102423245 and ends at 102432666 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CUEDC2 (10q24.32) / TRAF3IP2-AS1 (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CUEDC2   28352
Cards
Entrez_Gene (NCBI)CUEDC2  79004  CUE domain containing 2
AliasesC10orf66; bA18I14.5
GeneCards (Weizmann)CUEDC2
Ensembl hg19 (Hinxton)ENSG00000107874 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107874 [Gene_View]  ENSG00000107874 [Sequence]  chr10:102423245-102432666 [Contig_View]  CUEDC2 [Vega]
ICGC DataPortalENSG00000107874
TCGA cBioPortalCUEDC2
AceView (NCBI)CUEDC2
Genatlas (Paris)CUEDC2
WikiGenes79004
SOURCE (Princeton)CUEDC2
Genetics Home Reference (NIH)CUEDC2
Genomic and cartography
GoldenPath hg38 (UCSC)CUEDC2  -     chr10:102423245-102432666 -  10q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CUEDC2  -     10q24.32   [Description]    (hg19-Feb_2009)
EnsemblCUEDC2 - 10q24.32 [CytoView hg19]  CUEDC2 - 10q24.32 [CytoView hg38]
Mapping of homologs : NCBICUEDC2 [Mapview hg19]  CUEDC2 [Mapview hg38]
OMIM614142   
Gene and transcription
Genbank (Entrez)AB025425 AB232358 AF086406 BC000262 BF002772
RefSeq transcript (Entrez)NM_024040
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CUEDC2
Cluster EST : UnigeneHs.500874 [ NCBI ]
CGAP (NCI)Hs.500874
Alternative Splicing GalleryENSG00000107874
Gene ExpressionCUEDC2 [ NCBI-GEO ]   CUEDC2 [ EBI - ARRAY_EXPRESS ]   CUEDC2 [ SEEK ]   CUEDC2 [ MEM ]
Gene Expression Viewer (FireBrowse)CUEDC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79004
GTEX Portal (Tissue expression)CUEDC2
Human Protein AtlasENSG00000107874-CUEDC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H467   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H467  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H467
Splice isoforms : SwissVarQ9H467
PhosPhoSitePlusQ9H467
Domaine pattern : Prosite (Expaxy)CUE (PS51140)   
Domains : Interpro (EBI)CUE   
Domain families : Pfam (Sanger)CUE (PF02845)   
Domain families : Pfam (NCBI)pfam02845   
Conserved Domain (NCBI)CUEDC2
DMDM Disease mutations79004
Blocks (Seattle)CUEDC2
SuperfamilyQ9H467
Human Protein Atlas [tissue]ENSG00000107874-CUEDC2 [tissue]
Peptide AtlasQ9H467
HPRD13099
IPIIPI00100463   
Protein Interaction databases
DIP (DOE-UCLA)Q9H467
IntAct (EBI)Q9H467
FunCoupENSG00000107874
BioGRIDCUEDC2
STRING (EMBL)CUEDC2
ZODIACCUEDC2
Ontologies - Pathways
QuickGOQ9H467
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  negative regulation of macrophage cytokine production  nuclear membrane  negative regulation of cytokine production involved in inflammatory response  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  negative regulation of macrophage cytokine production  nuclear membrane  negative regulation of cytokine production involved in inflammatory response  
NDEx NetworkCUEDC2
Atlas of Cancer Signalling NetworkCUEDC2
Wikipedia pathwaysCUEDC2
Orthology - Evolution
OrthoDB79004
GeneTree (enSembl)ENSG00000107874
Phylogenetic Trees/Animal Genes : TreeFamCUEDC2
HOGENOMQ9H467
Homologs : HomoloGeneCUEDC2
Homology/Alignments : Family Browser (UCSC)CUEDC2
Gene fusions - Rearrangements
Fusion : QuiverCUEDC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCUEDC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CUEDC2
dbVarCUEDC2
ClinVarCUEDC2
1000_GenomesCUEDC2 
Exome Variant ServerCUEDC2
ExAC (Exome Aggregation Consortium)ENSG00000107874
GNOMAD BrowserENSG00000107874
Varsome BrowserCUEDC2
Genetic variants : HAPMAP79004
Genomic Variants (DGV)CUEDC2 [DGVbeta]
DECIPHERCUEDC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCUEDC2 
Mutations
ICGC Data PortalCUEDC2 
TCGA Data PortalCUEDC2 
Broad Tumor PortalCUEDC2
OASIS PortalCUEDC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCUEDC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCUEDC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CUEDC2
DgiDB (Drug Gene Interaction Database)CUEDC2
DoCM (Curated mutations)CUEDC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CUEDC2 (select a term)
intoGenCUEDC2
Cancer3DCUEDC2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614142   
Orphanet
DisGeNETCUEDC2
MedgenCUEDC2
Genetic Testing Registry CUEDC2
NextProtQ9H467 [Medical]
TSGene79004
GENETestsCUEDC2
Target ValidationCUEDC2
Huge Navigator CUEDC2 [HugePedia]
snp3D : Map Gene to Disease79004
BioCentury BCIQCUEDC2
ClinGenCUEDC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79004
Chemical/Pharm GKB GenePA134871975
Clinical trialCUEDC2
Miscellaneous
canSAR (ICR)CUEDC2 (select the gene name)
DataMed IndexCUEDC2
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCUEDC2
EVEXCUEDC2
GoPubMedCUEDC2
iHOPCUEDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 17 18:08:26 CET 2019
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