Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CUL9 (cullin 9)

Identity

Alias_symbol (synonym)H7AP1
KIAA0708
PARC
Other alias
HGNC (Hugo) CUL9
LocusID (NCBI) 23113
Atlas_Id 50656
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 43182184 and ends at 43224587 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCC10 (6p21.1) / CUL9 (6p21.1)ASH1L (1q22) / CUL9 (6p21.1)CUL9 (6p21.1) / MUC7 (4q13.3)
TBX1 (22q11.21) / CUL9 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CUL9   15982
Cards
Entrez_Gene (NCBI)CUL9  23113  cullin 9
AliasesH7AP1; PARC
GeneCards (Weizmann)CUL9
Ensembl hg19 (Hinxton)ENSG00000112659 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112659 [Gene_View]  ENSG00000112659 [Sequence]  chr6:43182184-43224587 [Contig_View]  CUL9 [Vega]
ICGC DataPortalENSG00000112659
TCGA cBioPortalCUL9
AceView (NCBI)CUL9
Genatlas (Paris)CUL9
WikiGenes23113
SOURCE (Princeton)CUL9
Genetics Home Reference (NIH)CUL9
Genomic and cartography
GoldenPath hg38 (UCSC)CUL9  -     chr6:43182184-43224587 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CUL9  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblCUL9 - 6p21.1 [CytoView hg19]  CUL9 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBICUL9 [Mapview hg19]  CUL9 [Mapview hg38]
OMIM607489   
Gene and transcription
Genbank (Entrez)AB014608 AJ318215 AK125228 AK128364 AK129649
RefSeq transcript (Entrez)NM_015089
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CUL9
Cluster EST : UnigeneHs.627169 [ NCBI ]
CGAP (NCI)Hs.627169
Alternative Splicing GalleryENSG00000112659
Gene ExpressionCUL9 [ NCBI-GEO ]   CUL9 [ EBI - ARRAY_EXPRESS ]   CUL9 [ SEEK ]   CUL9 [ MEM ]
Gene Expression Viewer (FireBrowse)CUL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23113
GTEX Portal (Tissue expression)CUL9
Human Protein AtlasENSG00000112659-CUL9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWT3
Splice isoforms : SwissVarQ8IWT3
PhosPhoSitePlusQ8IWT3
Domaine pattern : Prosite (Expaxy)CULLIN_1 (PS01256)    CULLIN_2 (PS50069)    DOC (PS51284)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)APC_su10/DOC_dom    ARM-type_fold    CPH_domain    CUL9    Cullin_CS    Cullin_homology    Cullin_homology_sf    Cullin_N    Cullin_neddylation_domain    Galactose-bd-like_sf    IBR_dom    Rib_L2_dom2    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)ANAPC10 (PF03256)    Cul7 (PF11515)    Cullin (PF00888)    IBR (PF01485)   
Domain families : Pfam (NCBI)pfam03256    pfam11515    pfam00888    pfam01485   
Domain families : Smart (EMBL)APC10 (SM01337)  Cullin_Nedd8 (SM00884)  IBR (SM00647)  
Conserved Domain (NCBI)CUL9
DMDM Disease mutations23113
Blocks (Seattle)CUL9
PDB (SRS)2JUF   
PDB (PDBSum)2JUF   
PDB (IMB)2JUF   
PDB (RSDB)2JUF   
Structural Biology KnowledgeBase2JUF   
SCOP (Structural Classification of Proteins)2JUF   
CATH (Classification of proteins structures)2JUF   
SuperfamilyQ8IWT3
Human Protein Atlas [tissue]ENSG00000112659-CUL9 [tissue]
Peptide AtlasQ8IWT3
HPRD06317
IPIIPI00744001   IPI00402732   IPI00965943   IPI00965776   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWT3
IntAct (EBI)Q8IWT3
FunCoupENSG00000112659
BioGRIDCUL9
STRING (EMBL)CUL9
ZODIACCUL9
Ontologies - Pathways
QuickGOQ8IWT3
Ontology : AmiGOmicrotubule cytoskeleton organization  protein binding  ATP binding  cytosol  cytosol  ubiquitin-dependent protein catabolic process  regulation of mitotic nuclear division  protein ubiquitination  cullin-RING ubiquitin ligase complex  ubiquitin protein ligase binding  post-translational protein modification  metal ion binding  
Ontology : EGO-EBImicrotubule cytoskeleton organization  protein binding  ATP binding  cytosol  cytosol  ubiquitin-dependent protein catabolic process  regulation of mitotic nuclear division  protein ubiquitination  cullin-RING ubiquitin ligase complex  ubiquitin protein ligase binding  post-translational protein modification  metal ion binding  
NDEx NetworkCUL9
Atlas of Cancer Signalling NetworkCUL9
Wikipedia pathwaysCUL9
Orthology - Evolution
OrthoDB23113
GeneTree (enSembl)ENSG00000112659
Phylogenetic Trees/Animal Genes : TreeFamCUL9
HOVERGENQ8IWT3
HOGENOMQ8IWT3
Homologs : HomoloGeneCUL9
Homology/Alignments : Family Browser (UCSC)CUL9
Gene fusions - Rearrangements
Fusion : QuiverCUL9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCUL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CUL9
dbVarCUL9
ClinVarCUL9
1000_GenomesCUL9 
Exome Variant ServerCUL9
ExAC (Exome Aggregation Consortium)ENSG00000112659
GNOMAD BrowserENSG00000112659
Varsome BrowserCUL9
Genetic variants : HAPMAP23113
Genomic Variants (DGV)CUL9 [DGVbeta]
DECIPHERCUL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCUL9 
Mutations
ICGC Data PortalCUL9 
TCGA Data PortalCUL9 
Broad Tumor PortalCUL9
OASIS PortalCUL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCUL9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCUL9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CUL9
DgiDB (Drug Gene Interaction Database)CUL9
DoCM (Curated mutations)CUL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CUL9 (select a term)
intoGenCUL9
Cancer3DCUL9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607489   
Orphanet
DisGeNETCUL9
MedgenCUL9
Genetic Testing Registry CUL9
NextProtQ8IWT3 [Medical]
TSGene23113
GENETestsCUL9
Target ValidationCUL9
Huge Navigator CUL9 [HugePedia]
snp3D : Map Gene to Disease23113
BioCentury BCIQCUL9
ClinGenCUL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23113
Chemical/Pharm GKB GenePA164718328
Clinical trialCUL9
Miscellaneous
canSAR (ICR)CUL9 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCUL9
EVEXCUL9
GoPubMedCUL9
iHOPCUL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 11:17:53 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.